View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_140 (Length: 249)
Name: NF18404_high_140
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_140 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 15081927 - 15082065
Alignment:
| Q |
101 |
ttgttgaaaccataaatcataataacataccagttatatagaccattgaaattattgttattttcacaatattttaagatcatgctagttatagtataaa |
200 |
Q |
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| T |
15081927 |
ttgttgcaaccataaatcataataacataccagttatatagaccattgaaattattgttattttcacaatattttaagatcatgctagttatagtataaa |
15082026 |
T |
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| Q |
201 |
tttttcagtttcacatttctctcaactctctcacaggtt |
239 |
Q |
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| T |
15082027 |
tttttcagtttcacatttctctcaactctctcacgggtt |
15082065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 15081813 - 15081903
Alignment:
| Q |
19 |
actaaaaatatgaaagttgattgcataaccattaggaatttat--caatatgaatatagttatttgatgtttgttaatttttgtttgttga |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
15081813 |
actaaaaatatgaaagttgactgcataaccattaggaatttatatcaatatgaatatagttatttgatgtttgttattttttgttttttga |
15081903 |
T |
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