View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_high_143 (Length: 248)

Name: NF18404_high_143
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_high_143
NF18404_high_143
[»] chr3 (5 HSPs)
chr3 (1-238)||(51484818-51485054)
chr3 (114-204)||(20585504-20585594)
chr3 (113-169)||(21005923-21005979)
chr3 (114-169)||(2566833-2566888)
chr3 (114-168)||(893701-893755)
[»] chr6 (5 HSPs)
chr6 (112-238)||(13032348-13032474)
chr6 (113-169)||(32018597-32018653)
chr6 (114-168)||(22577309-22577363)
chr6 (125-169)||(3213070-3213114)
chr6 (122-194)||(11444911-11444983)
[»] chr1 (8 HSPs)
chr1 (114-238)||(15115565-15115689)
chr1 (114-238)||(15140081-15140205)
chr1 (114-230)||(15100806-15100922)
chr1 (114-238)||(15123775-15123899)
chr1 (114-238)||(15147963-15148087)
chr1 (114-169)||(39629190-39629245)
chr1 (115-169)||(27109402-27109456)
chr1 (113-159)||(6504503-6504549)
[»] chr5 (6 HSPs)
chr5 (114-229)||(18615539-18615654)
chr5 (114-169)||(30776972-30777027)
chr5 (115-169)||(33757701-33757755)
chr5 (114-168)||(26656047-26656101)
chr5 (114-168)||(26927634-26927688)
chr5 (115-169)||(36608345-36608399)
[»] scaffold0591 (1 HSPs)
scaffold0591 (114-238)||(497-621)
[»] chr8 (7 HSPs)
chr8 (114-169)||(8170668-8170723)
chr8 (115-181)||(20516253-20516319)
chr8 (114-169)||(38149903-38149958)
chr8 (114-169)||(40413043-40413098)
chr8 (114-168)||(6443330-6443384)
chr8 (114-155)||(10408145-10408186)
chr8 (121-182)||(19554601-19554662)
[»] chr7 (8 HSPs)
chr7 (115-194)||(36933799-36933878)
chr7 (113-169)||(25970005-25970061)
chr7 (114-169)||(9249873-9249928)
chr7 (114-169)||(9283423-9283478)
chr7 (115-182)||(26199187-26199254)
chr7 (114-169)||(47718833-47718888)
chr7 (124-182)||(5893386-5893444)
chr7 (115-168)||(3959122-3959175)
[»] chr4 (10 HSPs)
chr4 (115-169)||(39051741-39051795)
chr4 (115-190)||(51407791-51407866)
chr4 (114-169)||(52721855-52721910)
chr4 (115-180)||(50589126-50589191)
chr4 (114-169)||(24784874-24784929)
chr4 (114-169)||(24823337-24823392)
chr4 (114-169)||(28149731-28149786)
chr4 (115-159)||(3925946-3925990)
chr4 (115-159)||(18356796-18356840)
chr4 (115-159)||(18431967-18432011)
[»] chr2 (1 HSPs)
chr2 (114-182)||(36592519-36592587)
[»] scaffold0341 (1 HSPs)
scaffold0341 (113-159)||(6186-6232)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 51484818 - 51485054
Alignment:
Q  1 aactgaagataaaagttgaattttgattaacatgaagtttaaataaattttaattttctttataattattnnnnnnnttgtgtactatatttagacnnnn 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||||||||| |||        
T  51484818 aactgaagataaaagttgaattttgattaacacgaagtttaaataaattttaattttctttataattattaaaaaaattgtgtactatattttgactttt 51484917  T
Q  101 nnnnnnaagactttaaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaa 200  Q
          |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  51484918 ttttg-aagactttaaaatgaaatttattaaaatcataataaattctaactagcgcaagaaatgctagaataagattcgtaacatagcaaaatagtacaa 51485016  T
Q  201 aggaatcaaccaccacacagaaacaccaaacacctatg 238  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  51485017 aggaatcaaccaccacatagaaacaccaaacacctatg 51485054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 114 - 204
Target Start/End: Complemental strand, 20585594 - 20585504
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaagga 204  Q
    ||||||| ||||||||||||||| ||| |||  ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  20585594 taaaatgaaatttattaaaatcacaatgaatcttaaccagcacaaggaatgctagaataagattcgttacatagcaaaatagtacaaagga 20585504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 21005923 - 21005979
Alignment:
Q  113 ttaaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    |||||||| ||||||||||||||| | | ||| ||||||| ||||||||||||||||    
T  21005923 ttaaaatgaaatttattaaaatcacagtgaatcctaaccaacacaagaaatgctaga 21005979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 2566833 - 2566888
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| ||| ||| ||||||| |||||| |||||||||    
T  2566833 taaaatgaaatttattaaaatcacaatgaatcctaaccaacacaaggaatgctaga 2566888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 893755 - 893701
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctag 168  Q
    ||||||||||||||||||||||  |||||||  ||||||||||||| | ||||||    
T  893755 taaaatggaatttattaaaatcgcaataaatcttaaccagcacaaggagtgctag 893701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 112 - 238
Target Start/End: Original strand, 13032348 - 13032474
Alignment:
Q  112 tttaaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaaggaatcaacc 211  Q
    ||||||||| ||||||||||||||| ||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  13032348 tttaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagaaatgttagaataggattcgtaacatagcaaaatagtacaaaggaatcaacc 13032447  T
Q  212 accacacagaaacaccaaacacctatg 238  Q
    |||||||| ||||||||||||||||||    
T  13032448 accacacaaaaacaccaaacacctatg 13032474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 32018653 - 32018597
Alignment:
Q  113 ttaaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    |||||||| ||||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  32018653 ttaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagaaatgctaga 32018597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 22577309 - 22577363
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctag 168  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||| | ||||||    
T  22577309 taaaatggaatttattaaaatcaaaatgagtcctaaccagcacaaggagtgctag 22577363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 3213114 - 3213070
Alignment:
Q  125 ttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    |||||||||||| ||| ||| |||||||||||||| |||||||||    
T  3213114 ttattaaaatcacaattaatcctaaccagcacaaggaatgctaga 3213070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 11444983 - 11444911
Alignment:
Q  122 aatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaata 194  Q
    |||||||||||  || ||| ||| |||| | ||||||| ||||||||| |||||||||||  |||||||||||    
T  11444983 aatttattaaacccacaatgaatcctaaacggcacaaggaatgctagattaagattcgtagaatagcaaaata 11444911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15115689 - 15115565
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaaggaatcaaccac 213  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15115689 taaaatggaatttattaaaatcacaatgaatcctaaccagcgcaagaaatgttagaataggattcgtaacatagcaaaatagtacaaaggaatcaaccac 15115590  T
Q  214 cacacagaaacaccaaacacctatg 238  Q
    |||||| ||||||||||||| ||||    
T  15115589 cacacaaaaacaccaaacacttatg 15115565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15140205 - 15140081
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaaggaatcaaccac 213  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15140205 taaaatggaatttattaaaatcacaatgaatcctaaccagcgcaagaaatgttagaataggattcgtaacatagcaaaatagtacaaaggaatcaaccac 15140106  T
Q  214 cacacagaaacaccaaacacctatg 238  Q
    |||||| ||||||||||||| ||||    
T  15140105 cacacaaaaacaccaaacacttatg 15140081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 114 - 230
Target Start/End: Complemental strand, 15100922 - 15100806
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaaggaatcaaccac 213  Q
    |||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  15100922 taaaatggaatttattaaaatcacgatgaatcctaaccagcacaagaaatgctagaatatgattcgtatcatagcaaaatagtacaaaggaatcaaccac 15100823  T
Q  214 cacacagaaacaccaaa 230  Q
    |||||| ||||||||||    
T  15100822 cacacaaaaacaccaaa 15100806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15123899 - 15123775
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaaggaatcaaccac 213  Q
    ||||||| ||||||||||||||  ||| ||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||    
T  15123899 taaaatgaaatttattaaaatcccaatgaatcctaaccagcacaagaaatgcaagaataggtttcgtaacatagcaaaatagtacaaagaaatcaaccac 15123800  T
Q  214 cacacagaaacaccaaacacctatg 238  Q
    |||||| ||||||||||||| ||||    
T  15123799 cacacaaaaacaccaaacacttatg 15123775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 15148087 - 15147963
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaaggaatcaaccac 213  Q
    ||||||| ||||||||||||||  ||| ||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||    
T  15148087 taaaatgaaatttattaaaatcccaatgaatcctaaccagcacaagaaatgcaagaataggtttcgtaacatagcaaaatagtacaaagaaatcaaccac 15147988  T
Q  214 cacacagaaacaccaaacacctatg 238  Q
    |||||| ||||||||||||| ||||    
T  15147987 cacacaaaaacaccaaacacttatg 15147963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 39629190 - 39629245
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||| |||||||||    
T  39629190 taaaatggaatttattaaaatcacaatgattcctaaccagcacaaggaatgctaga 39629245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 27109402 - 27109456
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||| |||||||||||||||| ||| | | ||||||||||||||||||||||||    
T  27109402 aaaatagaatttattaaaatcacaatgagtcctaaccagcacaagaaatgctaga 27109456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 6504549 - 6504503
Alignment:
Q  113 ttaaaatggaatttattaaaatcataataaattctaaccagcacaag 159  Q
    ||||||| |||||||||||||||| ||| ||||||||| ||||||||    
T  6504549 ttaaaatagaatttattaaaatcacaatgaattctaactagcacaag 6504503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 18615539 - 18615654
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaaggaatcaaccac 213  Q
    |||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18615539 taaaatggaatttattaaaatcacgatgaatcctaaccagcacaagaaatgctagaatatgattcgtaacatagcaaaatagtacaaaggaatcaaccac 18615638  T
Q  214 cacacagaaacaccaa 229  Q
    ||||||  ||||||||    
T  18615639 cacacaataacaccaa 18615654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 30776972 - 30777027
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||| |||||||||    
T  30776972 taaaatgaaatttattaaaatcacaattaatcctaaccagcacaaggaatgctaga 30777027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 33757701 - 33757755
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    |||||||||||||||||||||| ||||| | |||||||||| ||| |||||||||    
T  33757701 aaaatggaatttattaaaatcacaataactcctaaccagcataaggaatgctaga 33757755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 26656047 - 26656101
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctag 168  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||||| ||||||||    
T  26656047 taaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctag 26656101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 26927634 - 26927688
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctag 168  Q
    ||||||||||||||||||||||  ||| |||  ||||||||||||| ||||||||    
T  26927634 taaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctag 26927688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 36608399 - 36608345
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||| |||||||||||||||| ||| ||| |||||||||||||| |||| ||||    
T  36608399 aaaattgaatttattaaaatcagaatgaatcctaaccagcacaaggaatgttaga 36608345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 621 - 497
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaatagtacaaaggaatcaaccac 213  Q
    ||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||  ||||||    
T  621 taaaatggaatttattaaaatcacactaaatcctaaccagcacaaggaatgctagaataggattcgtaaaatagcaaaatagtacaaaggaa--aaccac 524  T
Q  214 cacacagaaa--caccaaacacctatg 238  Q
    |||||| |||   ||||||||||||||    
T  523 cacacacaaaataaccaaacacctatg 497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 8170668 - 8170723
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||    
T  8170668 taaaatgaaatttattaaaatcataataaatcctaaccagcacaaggaatgctaga 8170723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 20516253 - 20516319
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgta 181  Q
    |||||||||||||||||||||| | | ||| |||||||||||||| ||||||||| ||||| |||||    
T  20516253 aaaatggaatttattaaaatcacattgaatcctaaccagcacaaggaatgctagactaagagtcgta 20516319  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 38149958 - 38149903
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| | | |||||||||||||||||| |||||||||    
T  38149958 taaaatgaaatttattaaaatcacagtgaattctaaccagcacaaggaatgctaga 38149903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 40413098 - 40413043
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||||| | ||| |||||||||||||| |||| ||||    
T  40413098 taaaatgaaatttattaaaatcatagtgaatcctaaccagcacaaggaatgttaga 40413043  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 6443330 - 6443384
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctag 168  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||| | ||||||    
T  6443330 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggagtgctag 6443384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 10408145 - 10408186
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagca 155  Q
    ||||||||||||||||||||||| |||||||  |||||||||    
T  10408145 taaaatggaatttattaaaatcacaataaatcttaaccagca 10408186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 19554601 - 19554662
Alignment:
Q  121 gaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaa 182  Q
    |||||||||||||||||||  ||| || |||| |||||||||||||||| || || ||||||    
T  19554601 gaatttattaaaatcataaagaatcctgaccaacacaagaaatgctagattaggagtcgtaa 19554662  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 36933799 - 36933878
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaaaata 194  Q
    |||||||||||||||||||||| ||| ||| ||||| |||||||| |||||||| ||| || ||||||  ||||||||||    
T  36933799 aaaatggaatttattaaaatcacaatgaatcctaactagcacaaggaatgctaggataggagtcgtaaagtagcaaaata 36933878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 25970061 - 25970005
Alignment:
Q  113 ttaaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    |||||||| ||||||||||||||| ||| ||| |||||||||||||| |||||||||    
T  25970061 ttaaaatgaaatttattaaaatcacaattaatcctaaccagcacaaggaatgctaga 25970005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 9249873 - 9249928
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||| |||||||||    
T  9249873 taaaatgaaatttattaaaatcacaattaatcctaaccagcacaaggaatgctaga 9249928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 9283423 - 9283478
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||| |||||||||    
T  9283423 taaaatgaaatttattaaaatcacaattaatcctaaccagcacaaggaatgctaga 9283478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Original strand, 26199187 - 26199254
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaa 182  Q
    |||||||||||||||||||| | ||| ||| ||||| |||||||| ||||||||| || || ||||||    
T  26199187 aaaatggaatttattaaaattacaatgaatcctaacaagcacaaggaatgctagactaggagtcgtaa 26199254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 47718833 - 47718888
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||| ||| |||||    
T  47718833 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggaatactaga 47718888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 5893444 - 5893386
Alignment:
Q  124 tttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaa 182  Q
    ||||||||||||| ||| ||| |||||||||||||| ||| |||||||| || ||||||    
T  5893444 tttattaaaatcacaatgaatcctaaccagcacaaggaatactagaataggagtcgtaa 5893386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 3959175 - 3959122
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctag 168  Q
    |||||| ||||||||||||||| ||| ||| || ||||||||||||| ||||||    
T  3959175 aaaatgaaatttattaaaatcacaatgaatcctgaccagcacaagaagtgctag 3959122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 39051741 - 39051795
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| |||| ||||    
T  39051741 aaaatggaatttattaaaatcacaatgaattctaaccagcacaaggaatgttaga 39051795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 51407866 - 51407791
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaacatagcaa 190  Q
    |||||| ||||||||||||||| ||||| | |||||||||| ||| ||||||||| || || |||||| |||||||    
T  51407866 aaaatgaaatttattaaaatcacaataactcctaaccagcataaggaatgctagactaggagtcgtaaaatagcaa 51407791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 52721910 - 52721855
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| ||| ||| |||||||||||||| |||||||||    
T  52721910 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggaatgctaga 52721855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 50589126 - 50589191
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgt 180  Q
    |||||| ||||||||||||||| ||| | | |||||||||| ||||||||||||| || |||||||    
T  50589126 aaaatgaaatttattaaaatcacaatgagtcctaaccagcataagaaatgctagactaggattcgt 50589191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 24784929 - 24784874
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| ||| ||| |||||||| ||||| |||||||||    
T  24784929 taaaatgaaatttattaaaatcacaatgaatcctaaccagtacaaggaatgctaga 24784874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 24823337 - 24823392
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    ||||||| ||||||||||||||| ||| ||| |||||||| ||||| |||||||||    
T  24823337 taaaatgaaatttattaaaatcacaatgaatcctaaccagtacaaggaatgctaga 24823392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 28149786 - 28149731
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctaga 169  Q
    |||||| |||||||||||||||| ||| | | |||||||||||||| |||||||||    
T  28149786 taaaattgaatttattaaaatcacaatgagtcctaaccagcacaaggaatgctaga 28149731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 3925946 - 3925990
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaag 159  Q
    |||||||||||||||||||||| ||| ||| ||||| ||||||||    
T  3925946 aaaatggaatttattaaaatcacaatgaatactaacaagcacaag 3925990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 18356796 - 18356840
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaag 159  Q
    |||||||||||||||||||||| ||| ||| ||||| ||||||||    
T  18356796 aaaatggaatttattaaaatcacaatgaatcctaactagcacaag 18356840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 18432011 - 18431967
Alignment:
Q  115 aaaatggaatttattaaaatcataataaattctaaccagcacaag 159  Q
    |||||||||||||||||||||| ||| ||| ||||| ||||||||    
T  18432011 aaaatggaatttattaaaatcacaatgaatcctaactagcacaag 18431967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 36592519 - 36592587
Alignment:
Q  114 taaaatggaatttattaaaatcataataaattctaaccagcacaagaaatgctagaataagattcgtaa 182  Q
    ||||||||||||||||||||||| | | ||| |||||||||||||| ||||||||| || || ||||||    
T  36592519 taaaatggaatttattaaaatcaaagtgaatcctaaccagcacaaggaatgctagactaggagtcgtaa 36592587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 6232 - 6186
Alignment:
Q  113 ttaaaatggaatttattaaaatcataataaattctaaccagcacaag 159  Q
    ||||||| |||||||||||||||| ||| ||||||||| ||||||||    
T  6232 ttaaaatagaatttattaaaatcacaatgaattctaactagcacaag 6186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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