View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_154 (Length: 237)
Name: NF18404_high_154
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_154 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 41078045 - 41077825
Alignment:
| Q |
17 |
agaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatgattctgca |
116 |
Q |
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| T |
41078045 |
agaagacatgcataaaaggggtcagtatacatccatgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatgattctgca |
41077946 |
T |
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| Q |
117 |
tacaaaacctatgaagtaaaaccagaaatacaactaaggaatactaattactaagcactaaaaagatattgtcaccagagcagctaaactgatgctgcag |
216 |
Q |
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| T |
41077945 |
tacaaaacctatgaagtaaaaccagaaatacaactaaggaatactaattactaagcactaaaaagatattgtcaccagagcagctaaactgatgctgcag |
41077846 |
T |
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| Q |
217 |
caaaatggaattataatctcc |
237 |
Q |
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| T |
41077845 |
caaaatggaattataatctcc |
41077825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 1217228 - 1217178
Alignment:
| Q |
58 |
catagaatcaattaaagcatagcataatacaatataggcacacatctcatg |
108 |
Q |
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| T |
1217228 |
catagaatcaattaaagcatagcataataaaattcaagcacacatctcatg |
1217178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 4132034 - 4132091
Alignment:
| Q |
51 |
atgaaaacatagaatcaattaaagcatagcataatacaatataggcacacatctcatg |
108 |
Q |
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| T |
4132034 |
atgataacatagaatcgattaaagcatagcacaatacaattcaagcacatatctcatg |
4132091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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