View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_high_155 (Length: 236)
Name: NF18404_high_155
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_155 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 5745253 - 5745477
Alignment:
| Q |
16 |
gaaactatgaaaggcaataacatgttttgtttaatttgagtatctttattttaagtttatgctcattaactttactacttcctctttgtaccnnnnnnnn |
115 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5745253 |
gaaaccatgaaaggcaataacatgttttgtttaatttgagtatctttattttaagtttatgctcattaactttactacttcctctttgtacccaaaaaaa |
5745352 |
T |
|
| Q |
116 |
nnnnnnctatgcaatttcctatttgtctataaatggtgtagtttttaaagttctaatgatttcttctaaacaat----tttaaaatggctaaggatagaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5745353 |
aaaaaactatgcaatttcctatttgtctataaatggtgtagtttttaaagttctaatgatttcttctaaacaataacatttaaaatggctaaggatagaa |
5745452 |
T |
|
| Q |
212 |
atccaaataaataattcataaacct |
236 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5745453 |
atccaaataaataattcataaacct |
5745477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University