View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_157 (Length: 236)
Name: NF18404_high_157
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_157 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 36351185 - 36351406
Alignment:
| Q |
15 |
aattggattccattgactaaaccaccataacatgcaagattggatgttaataaaagaaagnnnnnnnnttgtgcaaagatgcttcctatattggagtgtt |
114 |
Q |
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| T |
36351185 |
aattggattccattgactaaaccaccataacatgcaagattggatgttaataaaagaaagaaaaaaaattgtgcaaagatgcttcctatattggagtgtt |
36351284 |
T |
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| Q |
115 |
tggaggtaaacgaatagaatacgaatacattctgttttgtctccttcaataagtttggtacttattcagcttgcaccatttaaaatataagtaagatgga |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36351285 |
tggaggtaaacgaatagaatatgaatacattctgttttgtctccttcaataagtttggtacttattcagcttgcaccatttaaaatataagtaagatgga |
36351384 |
T |
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| Q |
215 |
ccctaaacttttcattctttct |
236 |
Q |
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|||||||||||||||||||||| |
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| T |
36351385 |
ccctaaacttttcattctttct |
36351406 |
T |
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