View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_162 (Length: 232)
Name: NF18404_high_162
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_162 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 30472108 - 30472298
Alignment:
| Q |
1 |
tgaactcatcatttttacagccgttaaaatagcatacatgatttgcttttgctacctgtctaaattttatctaaacacctaattatgatggttgccaaac |
100 |
Q |
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| T |
30472108 |
tgaactcatcatttttacagccgttaaaatagcatacatgatttgcttttgctacttgtctaaattttatctaaacacctaattatgatggttgccaaac |
30472207 |
T |
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| Q |
101 |
acattcaaacatttatgttagaaacaattttataagcatggcatttttagggtt---aggcccaaaagtcctaaaccaaatggctttcacc |
188 |
Q |
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| T |
30472208 |
acattcaaacatttatgttagtaacaattttataagcatggcatttttagggttgtatggcccaaaagtcctaaaccaaatggctttcacc |
30472298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30393786 - 30393935
Alignment:
| Q |
1 |
tgaactcatcatttttacagccgttaaaatagcatacatgatttgcttttgctacctgtctaaattttatctaaacacctaattatgatggttgccaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393786 |
tgaactcatcatttttacagccgttaaaatagcatacatgatttgcttttgctacttgtctaaattttatctaaacacctaattatgatggttgccaaac |
30393885 |
T |
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| Q |
101 |
acattcaaacatttatgttagaaacaattttataagcatggcatttttag |
150 |
Q |
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| T |
30393886 |
acattcaaacatttaagttagtaacaattttataagcatggcatttttag |
30393935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 30394807 - 30394883
Alignment:
| Q |
156 |
ggcccaaaagtcctaaaccaaatggctttcacctcccatccgtcatgtttctcatgcgtcctcctaaatttcaaaac |
232 |
Q |
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| T |
30394807 |
ggcccaaaagtcctaaaccaaatggctttcacctcccatccgtcatgtttctcatgcgtcctcctaaatttcaaaac |
30394883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 232
Target Start/End: Original strand, 30472300 - 30472329
Alignment:
| Q |
203 |
tttctcatgcgtcctcctaaatttcaaaac |
232 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30472300 |
tttctcatgcgtcctcctaaatttcaaaac |
30472329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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