View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_169 (Length: 227)
Name: NF18404_high_169
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_169 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 51484496 - 51484712
Alignment:
| Q |
7 |
gattatgtgtttctatttaactcattttaatagtttaaatgtataatttgtcaattacacccttctaaattactcctacttgctaaaatcaagttaattt |
106 |
Q |
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| T |
51484496 |
gattatgtgttcctatttaactcattttaatagtttaaatgtataatttgtcgattacacccttctcaattactcctacttgctaaaatcaagttaattt |
51484595 |
T |
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| Q |
107 |
ttaaaacaaaattttgttacttacaataatggaacattgaaatgttagaattttaatttataaataaaatcagtaacattgtgattttcttttgttttga |
206 |
Q |
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| T |
51484596 |
ttaaaacaaaattttgttacctac---aatggaacattgaaatgttaaaattttaatttat-aagaaaatcagtaacattgtgattttcttttgttttga |
51484691 |
T |
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| Q |
207 |
ggagagtaacattgtgaagct |
227 |
Q |
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| T |
51484692 |
ggagagtaacattgtgaagct |
51484712 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 27907548 - 27907627
Alignment:
| Q |
12 |
tgtgtttctatttaac--tcattttaatagtttaaatgtataatttgtcaattacacc--cttctaaattactcctactt |
87 |
Q |
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| T |
27907548 |
tgtgtttctatttaactgtcgttttgatagtttaaaggtataatctgtcaattataccattttctcaattactcctactt |
27907627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 23687130 - 23687181
Alignment:
| Q |
14 |
tgtttctatttaact--cattttaatagtttaaatgtataatttgtcaatta |
63 |
Q |
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| T |
23687130 |
tgtttctatttaagtatcattttgatagtttaaaggtataatttgtcaatta |
23687181 |
T |
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