View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_172 (Length: 223)
Name: NF18404_high_172
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_172 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 42910565 - 42910773
Alignment:
| Q |
1 |
aataaaggattcgagctttctgtttcttccacatctagcaaacttcgattgaatcgagtacaacagatgcatcaattaaatataaaggttcttataattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910565 |
aataaaggattcgagctttctgtttcttccacatctagcaaacttcgattgaatcgagtacaacagatgcatcaattaaatataaaggttcttataattc |
42910664 |
T |
|
| Q |
101 |
ttaatatctactaatataatacatttatatttgagtccaaaagttacataggaaaaacaagttcaatccttaccttatcatggaccaaacacatatcata |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910665 |
ttaatatctactaatctaatacatttatatttgagtccaaaagttacataggaaaaacaagttcaatccttaccttatcatggaccaaacacatatcata |
42910764 |
T |
|
| Q |
201 |
ccatcaatt |
209 |
Q |
| |
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||||||||| |
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| T |
42910765 |
ccatcaatt |
42910773 |
T |
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