View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_high_175 (Length: 217)
Name: NF18404_high_175
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_175 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 5393445 - 5393645
Alignment:
| Q |
1 |
aggccatcagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5393445 |
aggccatcagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaa |
5393544 |
T |
|
| Q |
101 |
ttcaaggcattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggacattt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5393545 |
ttcaaggcattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggacattt |
5393644 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
5393645 |
c |
5393645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 5467886 - 5467695
Alignment:
| Q |
5 |
catcagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5467886 |
catcagatgaagcttgtcaaaattcaaagtgccttcacttatgttgatatgtcaagcaactatttagaggggccaataccgaatgagttaatgcaattca |
5467787 |
T |
|
| Q |
105 |
aggcattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggac |
196 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
5467786 |
aggcattgaatgctctaaatttgtcgcataatgcattaacaggccatataccatcatcagtggggaatttgaagaatcttgaatctatggac |
5467695 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 5379143 - 5379333
Alignment:
| Q |
5 |
catcagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattca |
104 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5379143 |
catcagatgaagcttatcaaagttcaaaaggccttcacttatgttgatatgtcaagcaactatttagaggggccaataccgaatgagttaatgcaattca |
5379242 |
T |
|
| Q |
105 |
aggcattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatgga |
195 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
5379243 |
aggcattgaatgctctaaatttgtcgcataatgcattaacaggccatataccatcatcagtggggaatttgaagaatcttgagtgtatgga |
5379333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 5423583 - 5423392
Alignment:
| Q |
5 |
catcagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattca |
104 |
Q |
| |
|
||||||||||||||||||||| |||||| || || |||||||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||| |
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|
| T |
5423583 |
catcagatgaagcttgtcaaagttcaaacggctttcacttatgtggatatgtcaagcaattacttagagggacaaatacctgatgagttaatgcaattca |
5423484 |
T |
|
| Q |
105 |
aggcattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggac |
196 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||| ||| ||||||||| ||||||| |
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|
| T |
5423483 |
aggcattgatggctctaaacttgtcacataatgcattaacgggacatataccatcatcagtggagaatttaaagcatcttgagtgtatggac |
5423392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 5346266 - 5346075
Alignment:
| Q |
5 |
catcagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattca |
104 |
Q |
| |
|
||||||||||||||||||||| | |||| ||||| |||||||| |||||||||| ||||||||| ||||| |||||||| |||||| |||||||||||| |
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|
| T |
5346266 |
catcagatgaagcttgtcaaagtccaaaaggccttcacttatgtggatatgtcaaacaattacttggagggaccaatacctaatgagctaatgcaattca |
5346167 |
T |
|
| Q |
105 |
aggcattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggac |
196 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| | ||| ||||||||| ||| ||||| |||||| ||||||||||||| ||||||| |
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|
| T |
5346166 |
aggcattgaatgctctgaacttgtcacataatgcattcaggggccatataccagcatcagtggagaatttaaagaatcttgagtgtatggac |
5346075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 5412911 - 5413089
Alignment:
| Q |
18 |
ttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattcaaggcattgaatgc |
117 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||||||||||| || || | |||||||||||| ||| ||| |||| |||||| ||||||||||| |
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|
| T |
5412911 |
ttgtcaaaattcaaagtaccttcacttacgttgatatgtcaagcaactatttgggggggccaatacctgatgtgttgatgcgattcaaagcattgaatgc |
5413010 |
T |
|
| Q |
118 |
tctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggac |
196 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||| ||| ||||||||||||||||| |
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|
| T |
5413011 |
tctaaacttgtcacataatgcattaacgggacatataccatcatcagtggagaatttaaagcatcttgagtctatggac |
5413089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 5354801 - 5354989
Alignment:
| Q |
8 |
cagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattcaagg |
107 |
Q |
| |
|
|||||||| || || ||||||||||||||||| |||||| | |||||||||| ||| || || |||||||||||||| ||||| ||| |||||| || | |
|
|
| T |
5354801 |
cagatgaacctggtaaaaattcaaagtgccttcacttatatagatatgtcaaacaactatttggaggggccaataccttatgagataacgcaattgaaag |
5354900 |
T |
|
| Q |
108 |
cattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggac |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||| ||| ||||| |
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|
| T |
5354901 |
cattgaatgctctaaacttgtcacataatgcattatcgagccatataccatcatcggtggggaatttgaagaatcttgaatctttggac |
5354989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 5502678 - 5502860
Alignment:
| Q |
19 |
tgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattcaaggcattgaatgct |
118 |
Q |
| |
|
||||||||| |||| ||||| |||||||| |||||||||| ||||||||| || ||||||||||| ||||| ||||| ||||||||||| |||||||| |
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|
| T |
5502678 |
tgtcaaaatccaaatggccttcacttatgtggatatgtcaaacaattacttggaagggccaatacctgatgagctaatggaattcaaggcactgaatgct |
5502777 |
T |
|
| Q |
119 |
ctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggacatttc |
201 |
Q |
| |
|
|| ||||| |||||||| ||||| | ||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
5502778 |
ctgaacttatcacataacgcatttacgggtcctataccatcatctgtggggaatttgaagaatctcgagtctatggacttttc |
5502860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 5356918 - 5357108
Alignment:
| Q |
11 |
atgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattcaaggcat |
110 |
Q |
| |
|
|||||| ||||||||||| ||| || || |||||||| ||||| |||| ||| || || |||||||||||||| ||||| ||||| |||| | | || |
|
|
| T |
5356918 |
atgaagtttgtcaaaattgaaatggcattcacttatgtggatatatcaaacaactatttggaggggccaatacctgatgagctaatggaattggaagtat |
5357017 |
T |
|
| Q |
111 |
tgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggacatttc |
201 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || |||||||||||| | |||| ||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
5357018 |
tgaatgctctgaacttatcacataatgcttttatgggtcatatatcgtcatctgtgggaaatttgaagaatcttgagtctatagacttttc |
5357108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 5363449 - 5363503
Alignment:
| Q |
141 |
taatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatgga |
195 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
5363449 |
taatgggacatataccatcatctgtggggactttgaagaatcttgagtctatgga |
5363503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 5 - 196
Target Start/End: Original strand, 20329319 - 20329510
Alignment:
| Q |
5 |
catcagatgaagcttgtcaaaattcaaagtgccttaacttatgttgatatgtcaagcaattacttagaggggccaataccgaatgagttaatgcaattca |
104 |
Q |
| |
|
||||||||||||||||||||| |||||| || || |||||||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||| |
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|
| T |
20329319 |
catcagatgaagcttgtcaaagttcaaacggctttcacttatgtggatatgtcaagcaattacttagagggacaaatacctgatgagttaatgcaattca |
20329418 |
T |
|
| Q |
105 |
aggcattgaatgctctaaacttgtcacataatgcattaatgggtcatataccatcattagtggggaatttgaagaatcttgagtctatggac |
196 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
20329419 |
aggcattgatggctctaaacttgtcacataatgcattaacgggacatataccatcatcagtggagaatttaaagcatcttgagtctatggac |
20329510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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