View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_high_177 (Length: 215)

Name: NF18404_high_177
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_high_177
NF18404_high_177
[»] chr7 (3 HSPs)
chr7 (7-114)||(27117304-27117411)
chr7 (18-69)||(6084671-6084722)
chr7 (130-160)||(27117254-27117284)
[»] chr8 (2 HSPs)
chr8 (30-114)||(8832943-8833027)
chr8 (20-86)||(27812048-27812114)
[»] chr2 (2 HSPs)
chr2 (18-85)||(24600141-24600207)
chr2 (18-85)||(24613907-24613973)
[»] scaffold0175 (1 HSPs)
scaffold0175 (20-91)||(27962-28033)
[»] chr5 (1 HSPs)
chr5 (19-85)||(2307735-2307801)
[»] chr3 (1 HSPs)
chr3 (20-75)||(43207553-43207608)
[»] chr4 (3 HSPs)
chr4 (20-62)||(54205527-54205569)
chr4 (130-160)||(54205432-54205462)
chr4 (81-114)||(54205473-54205506)
[»] chr1 (1 HSPs)
chr1 (24-97)||(50845758-50845831)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 27117411 - 27117304
Alignment:
Q  7 cttcgattaatatctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtactagtactgtacgcacccatga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||| ||||||||| |||||||||    
T  27117411 cttcgattaatatctctgaagcacgggtactccaatttgcaaaacgtacccgtaccgggtactccgtggatactagtactcgtactgtacacacccatga 27117312  T
Q  107 tgtaccaa 114  Q
    ||||||||    
T  27117311 tgtaccaa 27117304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 6084671 - 6084722
Alignment:
Q  18 atctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtact 69  Q
    |||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  6084671 atctctgaagcacgggtactccaatttgcaaaacgtacctgtaccgggtact 6084722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 160
Target Start/End: Complemental strand, 27117284 - 27117254
Alignment:
Q  130 aaaccttggtacggttacggtacggcggtgg 160  Q
    |||||||||||||||||||||||||||||||    
T  27117284 aaaccttggtacggttacggtacggcggtgg 27117254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 8832943 - 8833027
Alignment:
Q  30 cgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtactagtactgtacgcacccatgatgtaccaa 114  Q
    |||||||||||||||||||||||||||  |||| |||||||||| | |||||||||| |||| ||||||||||||||||||||||    
T  8832943 cgggtactccaatttgcaaaacgtacctgtaccgggtactccgcaggtactggtactcgtacagtacgcacccatgatgtaccaa 8833027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 27812048 - 27812114
Alignment:
Q  20 ctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtact 86  Q
    |||||||||| |||||||||||| |||||||||||||| |||| |||| ||||  | ||||||||||    
T  27812048 ctctgaagcatgggtactccaatctgcaaaacgtacccgtaccgggtattccgtaggtactggtact 27812114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 24600141 - 24600207
Alignment:
Q  18 atctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtac 85  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  24600141 atctctgaagcacgggtactccaatttgcaaaacgtacccgtaccgggtactccgcgg-tactggtac 24600207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 24613973 - 24613907
Alignment:
Q  18 atctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtac 85  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  24613973 atctctgaagcacgggtactccaatttgcaaaacgtacccgtaccgggtactccgcgg-tactggtac 24613907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 28033 - 27962
Alignment:
Q  20 ctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtactagtac 91  Q
    |||||||||||||||||||||||||||||||||||||| |||| || ||| ||||| |||||||||| ||||    
T  28033 ctctgaagcacgggtactccaatttgcaaaacgtacccgtaccgggcacttcgcgggtactggtactcgtac 27962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 2307735 - 2307801
Alignment:
Q  19 tctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtac 85  Q
    |||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||| |||||||||    
T  2307735 tctctgaaacaccggtactccaatttgcaaaacgtacccgtaccgggtactccgcgggtactggtac 2307801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 43207553 - 43207608
Alignment:
Q  20 ctctgaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcgg 75  Q
    |||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||    
T  43207553 ctctgaagcacgggtacttcaatttgcaaaatgtacccgtaccgggtactccgcgg 43207608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 54205569 - 54205527
Alignment:
Q  20 ctctgaagcacgggtactccaatttgcaaaacgtacccatacc 62  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  54205569 ctctgaagcacgggtactccaatttgcaaaacgtacccgtacc 54205527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 160
Target Start/End: Complemental strand, 54205462 - 54205432
Alignment:
Q  130 aaaccttggtacggttacggtacggcggtgg 160  Q
    |||||||||||||||||||||||||||||||    
T  54205462 aaaccttggtacggttacggtacggcggtgg 54205432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 114
Target Start/End: Complemental strand, 54205506 - 54205473
Alignment:
Q  81 ggtactagtactgtacgcacccatgatgtaccaa 114  Q
    |||||| |||||||||||||||||||||||||||    
T  54205506 ggtactggtactgtacgcacccatgatgtaccaa 54205473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 50845758 - 50845831
Alignment:
Q  24 gaagcacgggtactccaatttgcaaaacgtacccataccaggtactccgcggatactggtactagtactgtacg 97  Q
    |||||||  ||||||||||||||||||||| ||| |||| ||||||  |||| |||||||||| |||| |||||    
T  50845758 gaagcacctgtactccaatttgcaaaacgtgcccgtaccgggtactttgcgggtactggtactcgtacggtacg 50845831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University