View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_180 (Length: 210)
Name: NF18404_high_180
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_180 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 7e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 1104084 - 1104258
Alignment:
| Q |
17 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaacaaactttgtgaacaatacaaatgaag |
116 |
Q |
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| T |
1104084 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaacaaaatttgtgaacaatacaaatgaag |
1104183 |
T |
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| Q |
117 |
tttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaacacttgagaagcgtc |
191 |
Q |
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| T |
1104184 |
tttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacacttgagaagcgtc |
1104258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 1087540 - 1087692
Alignment:
| Q |
29 |
ccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaa---caaactttgtgaacaatacaaatgaagtttactaca |
125 |
Q |
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| T |
1087540 |
ccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattaca |
1087639 |
T |
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| Q |
126 |
catatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaaca |
178 |
Q |
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| T |
1087640 |
tatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaaca |
1087692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 1071870 - 1072030
Alignment:
| Q |
20 |
aggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttac-tcaaat--tgtcgaaacaaactttgtgaacaatacaaatgaag |
116 |
Q |
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| T |
1071870 |
aggagtggtccttggaatggagttggatttagtggagcacctatggagattattacgtcaagtgttatagctacaacacctgtgatcaattcaaatgaag |
1071969 |
T |
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| Q |
117 |
tttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaac |
177 |
Q |
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| T |
1071970 |
tttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaac |
1072030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 1047054 - 1047217
Alignment:
| Q |
17 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttac-tcaaat--tgtcgaaacaaactttgtgaacaatacaaatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || || || |||||| |||| | ||| | ||| | |||||||||| |||||| |
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| T |
1047054 |
cataggagtggtccttggaatggagttggatttagtggagcgcctatggagattgttacatcaactgttgttgttgcaagatctgtgaacaattcaaatg |
1047153 |
T |
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| Q |
114 |
aagtttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaac |
177 |
Q |
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| T |
1047154 |
aggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
1047217 |
T |
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