View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_22 (Length: 594)
Name: NF18404_high_22
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 349
Target Start/End: Complemental strand, 29672275 - 29671950
Alignment:
| Q |
15 |
atcatttgcgtcctgatattaaggttagatatatatgtacctannnnnnnatttcatataatttttattacaagttttgtgcttgaatttgaccctatga |
114 |
Q |
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| T |
29672275 |
atcatttgcgtcctgatattaaggttcgatatatatgtacctatttttttatttcatataatttttattacaagttttgtgcttgaatttgaccctatga |
29672176 |
T |
|
| Q |
115 |
ttacatagttttgcacattgataaattttgcttctacatagttgcatggaattgctttctacttaatttcaactatgtttttccaagattatttcttgaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
29672175 |
ttacatagttttgcacattgataaattttgcttctacatagttgcatggaattgctttcaacttaatttcaactatgtttttccgagattatttcttgaa |
29672076 |
T |
|
| Q |
215 |
ataatattttcctatttatccgatgatctagatttagatgatttagattcatattttcaaggatctttgttttttagggaggatctaggtttgtcatccg |
314 |
Q |
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| T |
29672075 |
ataatattttcctatttatccgatgatctagattt---------agattcatattttcaaggatctttgttttttagggaggatctaggtttgtcatccg |
29671985 |
T |
|
| Q |
315 |
catatataggctgattgatacatctagagatctaa |
349 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
29671984 |
catatataggttgattgatacatctagagatctaa |
29671950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 414 - 578
Target Start/End: Complemental strand, 29671890 - 29671725
Alignment:
| Q |
414 |
atcttgttaatataaatcaatcttgatgtgggtttcatccattttttagcacaaaataaaaatgtaaatttttgttttgatctaccctttgataagtgat |
513 |
Q |
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| T |
29671890 |
atcttgttaatataaatcaatcttgatgtgggtttcatcaattttttagcacaaaataaaaatgtaaaattttgttttgatctaccctttgataagtgat |
29671791 |
T |
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| Q |
514 |
actttttgtctcttaaca-nnnnnnnngacgaaattgttccttaacatttaaaacatatcatatgt |
578 |
Q |
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| T |
29671790 |
actttttgtctcttaacatttttttttgacgaaattgtcccttaacatttaaaacatgtcatatgt |
29671725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 27003066 - 27002964
Alignment:
| Q |
15 |
atcatttgcgtcctgatattaaggttagatatatatgtacctannnnnnnatttcatataattttt-attacaagttttgtgc-ttgaatttgaccctat |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
27003066 |
atcatttgcgtcctgatattaagtttagatatat--gtaccaatttttttatttcatataattttttattacaagttttgtgctttgaatttgaccctag |
27002969 |
T |
|
| Q |
113 |
gatta |
117 |
Q |
| |
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||||| |
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|
| T |
27002968 |
gatta |
27002964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 35538171 - 35538273
Alignment:
| Q |
15 |
atcatttgcgtcctgatattaaggttagatatatatgtacctannnnnnnatttcatataatttt-tattacaagttttgtgc-ttgaatttgaccctat |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
35538171 |
atcatttgcgtcctgatattaagtttagatatat--gtaccaatttttttatttcatataattttttattacaagttttgtgctttgaatttgaccctag |
35538268 |
T |
|
| Q |
113 |
gatta |
117 |
Q |
| |
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||||| |
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|
| T |
35538269 |
gatta |
35538273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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