View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_high_23 (Length: 589)
Name: NF18404_high_23
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_23 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 22414766 - 22415067
Alignment:
| Q |
11 |
agaatataatggaaatgataaaagtcacggttatgacaaagtaattgctacttgaatttatcctgcatagttcttttacttattttgtcatgagtttcaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22414766 |
agaatataatggaaatgataaaagtcacggttatgacaaagtaattgctacttgaatttatcttgcatagttcttttacttattttgtcatgagtttcaa |
22414865 |
T |
|
| Q |
111 |
tgtatannnnnnnncgat--gtgtgtacgagaagagtcgtatgaacctctacttatcttggatgattgagtttaagggtaaggaagtaaacaaca----- |
203 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22414866 |
tgtatattttttttcgatatgtgtgtacgagaagagtcgtatgaacctctacttatcttggatgattgagtttaagggtaaggaagtaaacaacaccaca |
22414965 |
T |
|
| Q |
204 |
taatgatgctttagcttcatgccaataagccaatcagagaagtaggcctcttcaaaacaactctatctgctctaccaacaaatcattaattattactgat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22414966 |
taatgatgctttagcttcatgccaataagccaatcagagaagtaggcctcttcaaaacaactctatctgctctaccaacaaatcattaattattacttat |
22415065 |
T |
|
| Q |
304 |
aa |
305 |
Q |
| |
|
|| |
|
|
| T |
22415066 |
aa |
22415067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 340 - 571
Target Start/End: Original strand, 22415083 - 22415326
Alignment:
| Q |
340 |
cttgataaaagaccttgtcattttcttgaatttatggtaaaaacttgataaaaacttg-----------tcatgttcaatgtatattttcttgatgaaaa |
428 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
22415083 |
cttgataaagcaccttgtcattttcttgaatttatggtaaaaacttgataaaaacttgataacctcttgtcatgttcaatgtatattttcttgataaaaa |
22415182 |
T |
|
| Q |
429 |
gaccttgtcattttctcgaaaacaaaa-cttgataaacatgtaatcattaaatccccttaaagccttaaatttcatttttcaccataaaccacacactat |
527 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
22415183 |
caccttgtcattttctcgaaaaaaaaaacttgataaacatgtaatcattaaatccccttaaagcctttaatttcatctttcaccataaaccacacactat |
22415282 |
T |
|
| Q |
528 |
gtctaatcaaaccatgcatccaccacctacaaccgatccttacc |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22415283 |
gtctaatcaaaccatgcatccaccacctacaaccgatccttacc |
22415326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University