View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_high_24 (Length: 573)
Name: NF18404_high_24
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 10 - 556
Target Start/End: Original strand, 41791785 - 41792331
Alignment:
| Q |
10 |
attatactgtcgctgagatcaacaatgtgagtttgtatatgtaacagagcttcctgggctgggaacatcgtatcattgggacccttaagtacacaatgca |
109 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41791785 |
attatactgtcactgagatcaacaatgtgagtttgtatatgtaacagagcttcctgggctgggaacatcgtatcattgggacccttaagtacacaatgca |
41791884 |
T |
|
| Q |
110 |
caataataagagttagaaccttgagcatatgatgtatatcacatttacatcaaaaacatgtcgatatgcatctaaaagggtttaacatttaggcaggagt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41791885 |
caataataagagttagaaccttgagcatatgatgtatatcacatttacgtgaaaaacatgtcgatatgcatctaaaagggtttaacatttaggcaggagt |
41791984 |
T |
|
| Q |
210 |
tttttcccctagaactacaacactacgactagtcctagcaagagaccttaaacaatttgcactggttatgcacactacactatagacagtggcagagaga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41791985 |
tttttcccctagaactacaacactacgactagtcctagcaagagagcttaaacaatttgcactggttatgcacactacactatagacagtggcagagaga |
41792084 |
T |
|
| Q |
310 |
acaagagaataaaagtacctcctctgaagtaatgataaccatctgttcatccgaaccaccaacacgatcagaaatctgaacatctactccaactcgatcc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41792085 |
acaagagaataaaagtacctcctctgaagtaatgataaccatctgttcatccgaaccaccaacacgatcagaaatctgaacatctactccaactcgatcc |
41792184 |
T |
|
| Q |
410 |
tgaaggagctctaaaattccacctgattccccgacaatacgatcaaccctatcaaccggacagagtatacgaaaaataaggtcttcgtagaagggctgtt |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41792185 |
tgaaggagctctaaaattccacctgattccccgacaatacgatcaaccctatcaaccggacagagtatacgaaaaataaggtcttcgtagaagggctgtt |
41792284 |
T |
|
| Q |
510 |
catcatgagccacaggagcagccccctgatccattgaataacttatt |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41792285 |
catcatgagccacaggagcagccccctgatccattgaataacttatt |
41792331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University