View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_25 (Length: 566)
Name: NF18404_high_25
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_25 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 566
Target Start/End: Complemental strand, 3088186 - 3087621
Alignment:
| Q |
1 |
cctcatggcagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaataagagcacatgacaaaaataactaca |
100 |
Q |
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| T |
3088186 |
cctcaaggcagtcccctatgtttgttaacagcaacaaaatgttgcattaaaaataaatatttttgagatttaatatgagcacatgacaaaaataactaca |
3088087 |
T |
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| Q |
101 |
tatacaaatagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatgaagtggacttgtccatctatatttgtaccagtgcct |
200 |
Q |
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| T |
3088086 |
tatacaaatagtgcttacttgaatattgaaaaccacatttttcatctggtgtgtcaatgaaatgtagtggacttgtccatctatatttgtaccagtgcct |
3087987 |
T |
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| Q |
201 |
aatttgatcaggccatacacataaggctgataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgcc |
300 |
Q |
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| T |
3087986 |
aatttgatcaggccatacacataaggctgataagttaccattgacatggggaggtaacaaatgatgaactgcttctgatgcctcaggctttaaaagtgcc |
3087887 |
T |
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| Q |
301 |
tatcaatcatatagaaatcatcaattactttatcataattatgattccaataatacccttcaagaataacagttatttgaattagcccttatacttattc |
400 |
Q |
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| T |
3087886 |
tatcaatcatatagaaatcatcaattactttatcataattatgattccaataatacccttcaagaataacagttatttgaattagcccttatacttattc |
3087787 |
T |
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| Q |
401 |
ataaccagcttgacaatcatttgatacattagctatgtatatgtttggttcacatttgtatttcttagaattgtcaattgtttttaggttactgaaacgt |
500 |
Q |
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| T |
3087786 |
ataaccagcatgacaatcatttgatacattagctatgtatatgtttggttcacatttgtatttcttagaattgtcaattgtttttaggttactgaaacgt |
3087687 |
T |
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| Q |
501 |
gatttgactataaatagttatgtttcgctttggattttagaattgattttaggttagtgatacgtg |
566 |
Q |
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| T |
3087686 |
gatttgactataaatagttatgtttcgctttggattttagaattgattttaggttagtgatacgtg |
3087621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 476 - 566
Target Start/End: Complemental strand, 3087646 - 3087556
Alignment:
| Q |
476 |
aattgtttttaggttactgaaacgtgatttgactataaatagttatgtttcgctttggattttagaattgattttaggttagtgatacgtg |
566 |
Q |
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| T |
3087646 |
aattgattttaggttagtgatacgtgatttgaccataaatagttatgtttcgcttttgattttagaattgattttaggttagtgatacgtg |
3087556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 34922119 - 34922185
Alignment:
| Q |
483 |
tttaggttactgaaacgtgatttgactataaatagttatgtttcgctttggattttagaattgattt |
549 |
Q |
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| T |
34922119 |
tttaggttagttaaacttgatttgactataaattgttatgtttggcttccgactttggaattgattt |
34922185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 530
Target Start/End: Original strand, 34898736 - 34898768
Alignment:
| Q |
498 |
cgtgatttgactataaatagttatgtttcgctt |
530 |
Q |
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| T |
34898736 |
cgtgatttgactataaattgttatgtttcgctt |
34898768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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