View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_33 (Length: 508)
Name: NF18404_high_33
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 114 - 490
Target Start/End: Original strand, 11195354 - 11195730
Alignment:
| Q |
114 |
atattaagcaagttgcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgac |
213 |
Q |
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||||||||||||||||||||||| ||| || ||||||||||||||||||||| || ||||||| |||||| || ||| ||||||||||||||||||| |
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| T |
11195354 |
atattaagcaagttgcaaagagggaaaagattaatcttaacatatatacagaagtcatatacatttgtaagcacgttgaataaattatcatatagttgac |
11195453 |
T |
|
| Q |
214 |
attgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtgatgt |
313 |
Q |
| |
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||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||| | ||| |||||||| ||||||| |
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| T |
11195454 |
attgtcaccttaaacttgaaattttacaatacaatttgaatgaagttttaatctttttttacaaagtcaacaatgagctgagaggctagcccagtgatgt |
11195553 |
T |
|
| Q |
314 |
tagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatttcnnnnnnngtttactgcataactaaccatagtacc |
413 |
Q |
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||| |||||||||||| |||||||| ||||| |||||||||||| |||||||| |||| |||||||||| | ||||||| |||| |
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| T |
11195554 |
tagttgttgcagctgcgtacactataatgaaagaatattttagtaaagtttgtaaccaatgattctttttattctttactgcattcccaaccataatacc |
11195653 |
T |
|
| Q |
414 |
ttcttgcagaccatgctcctcatcctttattttcttcaccataattgaatcaaatacacttgaaagaatgctcgtat |
490 |
Q |
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||||||| ||||||| |||||| ||||| |||||||| |||| || ||||||||||||||||||||||||||||| |
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| T |
11195654 |
ctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcgtat |
11195730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 114 - 490
Target Start/End: Original strand, 11154907 - 11155283
Alignment:
| Q |
114 |
atattaagcaagttgcaaagaggaaaatcatgaatcttaacatatatacagaactcgtatacatctgtaaggacaccgaacaaattatcatatagttgac |
213 |
Q |
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||||||||||||||||||||||| ||| || || ||| |||||||||||||| || ||||||| | |||| || ||||||||||||||||||||||| |
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| T |
11154907 |
atattaagcaagttgcaaagagggaaaagattaaccttgacatatatacagaagtcatatacatttataagcacgttgaacaaattatcatatagttgac |
11155006 |
T |
|
| Q |
214 |
attgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtgatgt |
313 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||| | ||| |||||||||||||||| |
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| T |
11155007 |
attgtcaccttaaacttgaaattttacaatacaatttgaatgaagttttaatctttttttacaaagtcaacaatgagttgagaggctagcccggtgatgt |
11155106 |
T |
|
| Q |
314 |
tagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatttcnnnnnnngtttactgcataactaaccatagtacc |
413 |
Q |
| |
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||| |||||||||||||| ||||| ||||| |||||||||||| || |||| |||| |||||||||| | ||||||| |||| |
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| T |
11155107 |
tagttgttgcagctgcatggactataatgaaagaatattttagtaaagtttgtttccaatgattctttttattctttactgcattcccaaccataatacc |
11155206 |
T |
|
| Q |
414 |
ttcttgcagaccatgctcctcatcctttattttcttcaccataattgaatcaaatacacttgaaagaatgctcgtat |
490 |
Q |
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| T |
11155207 |
ctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcgtat |
11155283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 224 - 362
Target Start/End: Complemental strand, 11246591 - 11246449
Alignment:
| Q |
224 |
taaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnn----caaaaagtcaacaattatagaagaagctagcccggtgatgttagatg |
319 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
11246591 |
taaactagaaatttcacaatacaatttgaatgaagttttaacttttttttcttcataaagtcaacaattatagaagaagctagcccgatgatgttagttg |
11246492 |
T |
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| Q |
320 |
ttgcagctgcatacactatctggaaagtatattttagtaataa |
362 |
Q |
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| T |
11246491 |
ttgcagctgcaaacactatctggaaagtatattttagtgataa |
11246449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 198 - 486
Target Start/End: Original strand, 11208096 - 11208380
Alignment:
| Q |
198 |
ttatcatatagttgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaa |
297 |
Q |
| |
|
|||| ||||||||||||||||| | |||| |||||||| ||| |||||||||||||||| |||||| | ||||||||||||| ||||||| |
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| T |
11208096 |
ttattatatagttgacattgtcgct-taaatatgaaatttcacagtacaatttgaatgaaggtttaacttttt---ataaagtcaacaattccagaagaa |
11208191 |
T |
|
| Q |
298 |
gctagcccggtgatgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatttcnnnnnnngtttactgcat |
397 |
Q |
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||| ||||||||||| | ||||||||||||||||||| |||||||| |||||| |||||| |||||||||||||| || |||| || |
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| T |
11208192 |
actatcccggtgatgtcacctgttgcagctgcatacactgtctggaaacaatatttggctaataatggtaaccaacgattcttctttttcttcactggat |
11208291 |
T |
|
| Q |
398 |
aactaaccatagtaccttcttgcagaccatgctcctcatcctttattttcttcaccataattgaatcaaatacacttgaaagaatgctc |
486 |
Q |
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| T |
11208292 |
gcccaaccatagtaccttcttccacaccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaagaatgctc |
11208380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 11316048 - 11315989
Alignment:
| Q |
318 |
tgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatt |
377 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
11316048 |
tgttgcagctatatacactacctggaaagtatattttagtaataacggtaaccaatgatt |
11315989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 479
Target Start/End: Complemental strand, 11315976 - 11315911
Alignment:
| Q |
414 |
ttcttgcagaccatgctcctcatcctttattttcttcaccataattgaatcaaatacacttgaaag |
479 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||| |
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| T |
11315976 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
11315911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 485
Target Start/End: Original strand, 11169286 - 11169557
Alignment:
| Q |
210 |
tgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaagctagcccggtg |
309 |
Q |
| |
|
|||||||||||| |||| ||||||||| || |||||||||||||||| |||||| | |||||||| |||| ||||||| ||| |||||| |
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|
| T |
11169286 |
tgacattgtcact-taaatttgaaatttcacggtacaatttgaatgaaggtttaacttttt---ataaagtcaatcattacagaagaaactattccggtg |
11169381 |
T |
|
| Q |
310 |
atgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatttcnnnnnnngtttactgcataactaaccatag |
409 |
Q |
| |
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|||| | ||||| ||||||||||||| ||| |||| |||||| |||||| |||||||||||||| ||| || | || | |||||||| |
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| T |
11169382 |
atgtcacctgttgtagctgcatacactgtctcgaaacaatatttggctaataatggtaaccaacgattcttttttttgttcacgggatgtccaaccatag |
11169481 |
T |
|
| Q |
410 |
taccttcttgcagaccatgctcctcatcctttattttcttcaccataattgaatcaaatacacttgaaagaatgct |
485 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||| |||| | | ||||| |||||| ||||||||||||||||| |
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|
| T |
11169482 |
taccttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgct |
11169557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 377
Target Start/End: Original strand, 11273084 - 11273259
Alignment:
| Q |
198 |
ttatcatatagttgacattgtcaccataaacttgaaatttaacaatacaatttgaatgaagttttaacnnnnnnncaaaaagtcaacaattatagaagaa |
297 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||||| || |||||| ||||||||| |||||| | |||||||||||||| ||||||| |
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| T |
11273084 |
ttattatatagttgacattgtcact-taaatttgaaatttcaccgtacaatatgaatgaaggtttaacttttt---ataaagtcaacaattacagaagaa |
11273179 |
T |
|
| Q |
298 |
gctagcccggtgatgttagatgttgcagctgcatacactatctggaaagtatattttagtaataacggtaaccaacgatt |
377 |
Q |
| |
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||| |||||||||| | ||||| | ||||||||||| ||||||| ||||||| |||||| | ||||||| |||| |
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|
| T |
11273180 |
actattccggtgatgtcacctgttgtaactgcatacactgactggaaacaatattttgctaataatgataaccaatgatt |
11273259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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