View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_high_38 (Length: 481)
Name: NF18404_high_38
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_38 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 660321 - 660780
Alignment:
| Q |
17 |
aaaaccagttcaagaaatctgagttgaaaccaaataacttcctacctaggcatgaataatatacaaaatgcaagaaagagnnnnnnnnn----tgttcat |
112 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
660321 |
aaaactagttcaagaaatctgagttgaaaccaaataacttcctacctaggcatgaataatatacaaaatgcaagaaagagaaaaaaaaaaaaatgttcat |
660420 |
T |
|
| Q |
113 |
taatctaattagagatgtttggtcgtgagcttgccaacgttgaattgtgcggcaacaacctccaatcgcgccgccatgaatagaagcctgcaccacacgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660421 |
taatctaattagagatgtttggtcgtgagcttgccaac------------------aacctccaatcgcgccgccatgaatagaagcctgcaccacacgt |
660502 |
T |
|
| Q |
213 |
aacatgggggataaacagaactataacaaatcttccaacatatattaattttgcaaaaatatattcatacttaaattcatgacagataatcaaggtctaa |
312 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660503 |
aacatgggggataaacagaactatagcaaatcttccaacatatattaattttgcaaaaatatattcatacttaaattcatgacagataatcaaggtctaa |
660602 |
T |
|
| Q |
313 |
acaagtaaaccattgtaatatg-----------------acgtaaccaagctttcaacataatcctggacattgaaccaccaagattttttgattctctt |
395 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
660603 |
acaagtaaaccattgtaatatgaacttacattcaacaatacgtaaccaagctttcaacataatcctggacattgaaccaccaagattttttgattctctt |
660702 |
T |
|
| Q |
396 |
tacgcttttatctctcctattatagagaattgctgaactttcacaactggttttcaataaatagtgtatcattcttctc |
474 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
660703 |
tatgcttttatctctccaattatagagaattgctgaactttcacaactggttttcaat-aatagtgtatcattcttctc |
660780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 22070827 - 22070781
Alignment:
| Q |
266 |
caaaaatatattcatacttaaattcatgacagataatcaaggtctaa |
312 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||| ||||| |
|
|
| T |
22070827 |
caaaaatatattcatacttaaatttaggacagataatcaagctctaa |
22070781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 22071054 - 22070977
Alignment:
| Q |
17 |
aaaaccagttcaagaaatctgagttgaaaccaaataacttcctacctaggcatgaataatatacaaaatgcaagaaagag |
96 |
Q |
| |
|
||||||||| || |||| |||||||||| |||||||||||||| | ||| | |||| |||||||||||||||||||| |
|
|
| T |
22071054 |
aaaaccagtacagaaaatttgagttgaaatcaaataacttcctatcaagggtttaata--atacaaaatgcaagaaagag |
22070977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University