View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_high_44 (Length: 445)

Name: NF18404_high_44
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_high_44
NF18404_high_44
[»] chr8 (1 HSPs)
chr8 (1-432)||(45311059-45311491)
[»] chr5 (3 HSPs)
chr5 (345-403)||(6074613-6074671)
chr5 (345-384)||(34510047-34510086)
chr5 (355-403)||(31646018-31646066)
[»] chr2 (4 HSPs)
chr2 (345-391)||(5071259-5071305)
chr2 (182-284)||(6089864-6089966)
chr2 (196-284)||(5930408-5930496)
chr2 (22-85)||(35664413-35664477)
[»] chr7 (7 HSPs)
chr7 (355-403)||(30992700-30992748)
chr7 (249-284)||(35562432-35562467)
chr7 (43-85)||(3412289-3412331)
chr7 (207-284)||(25855261-25855338)
chr7 (356-384)||(21329194-21329222)
chr7 (356-396)||(24045164-24045204)
chr7 (355-403)||(40775456-40775504)
[»] scaffold0157 (1 HSPs)
scaffold0157 (355-406)||(1015-1066)
[»] chr4 (7 HSPs)
chr4 (355-406)||(12519845-12519896)
chr4 (356-403)||(20961638-20961685)
chr4 (355-403)||(9474416-9474464)
chr4 (236-284)||(28990323-28990371)
chr4 (355-403)||(31601233-31601281)
chr4 (355-403)||(42972227-42972275)
chr4 (356-403)||(54420617-54420665)
[»] chr3 (3 HSPs)
chr3 (39-85)||(9107226-9107272)
chr3 (207-284)||(20201099-20201176)
chr3 (207-284)||(20203281-20203358)
[»] chr6 (3 HSPs)
chr6 (355-403)||(7049434-7049482)
chr6 (355-403)||(20845197-20845245)
chr6 (355-403)||(23843301-23843349)
[»] chr1 (1 HSPs)
chr1 (356-384)||(12147944-12147972)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 45311491 - 45311059
Alignment:
Q  1 attcttttgttgggacctatgttttgtacttaattttt-aggtctaggacggccgccctccttgccctgcctcagatacggccctggttctaaattctaa 99  Q
    ||||||||||||||||| | ||||  |||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||||||    
T  45311491 attcttttgttgggacccaggtttcatacttaattttttaggtctaggacggccgctctccttgccctgcctcaaatacggcgttggttctaaattctaa 45311392  T
Q  100 tgaataacgacggatggacggaaactagagagaattctctctctattagctatcctattttactattatatatacggttttatctctttcattcttcaaa 199  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45311391 tgaataacgacggatggacgaaaactagagagaattccctctctatttgctatcctattttactattatatatacggttgtatctctttcattcttcaaa 45311292  T
Q  200 gaaaggagatttaaggtaaatctttgaaccaaagtcattcatctaattagtttttctcattcacttttatttaaataagtgatttagttatcttaatgtg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45311291 gaaaggagatttaaggtaaatctttgaaccaaagtcattcatctaaatagtttttctcattcacttttatttaaataagtgatttagttatcttattgtg 45311192  T
Q  300 acattgctttgttcgtcgtctttgttcaatttattttgctttcgatgtttgttacgttcagattgtcagatcaacttcgatctagagtagattcaataaa 399  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45311191 acattgttctgttcgtcgtctttgttcaatttgttttgctttcgatgtttgttacgttcagattgtcagatcagcttcgatctagagtagattcaataaa 45311092  T
Q  400 tgacattgccatattggtgttgtcaatgtttca 432  Q
    ||||||||||||||| |||| ||||||||||||    
T  45311091 tgacattgccatattagtgtcgtcaatgtttca 45311059  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 403
Target Start/End: Complemental strand, 6074671 - 6074613
Alignment:
Q  345 tgtttgttacgttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    ||||||||  ||||||||||||||||||||||||||| || |||||| |||| ||||||    
T  6074671 tgtttgttcggttcagattgtcagatcaacttcgatccagtgtagatccaatcaatgac 6074613  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 384
Target Start/End: Complemental strand, 34510086 - 34510047
Alignment:
Q  345 tgtttgttacgttcagattgtcagatcaacttcgatctag 384  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  34510086 tgtttgtttcgttcagattgtcagttcaacttcgatctag 34510047  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 31646018 - 31646066
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    ||||||||||||||||||||||||||| || | |||| |||| ||||||    
T  31646018 gttcagattgtcagatcaacttcgatccagtgcagatccaatcaatgac 31646066  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 391
Target Start/End: Complemental strand, 5071305 - 5071259
Alignment:
Q  345 tgtttgttacgttcagattgtcagatcaacttcgatctagagtagat 391  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||    
T  5071305 tgtttgttcggttcagattgtcagatcaacttcgatctagtgtagat 5071259  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 6089864 - 6089966
Alignment:
Q  182 tctctttcattcttcaaagaaaggagatttaaggtaaatctttgaaccaaagtcattcatctaattagtttttctcattcacttttatttaaataagtga 281  Q
    |||| ||||| | |||||||  || |||||||||| ||| ||||| ||||| |||  | ||||||| ||||||||  ||| |||||||| ||||||||||    
T  6089864 tctccttcatccatcaaagaggggtgatttaaggtcaatttttgacccaaaatcacccctctaattcgtttttctatttcccttttattgaaataagtga 6089963  T
Q  282 ttt 284  Q
    |||    
T  6089964 ttt 6089966  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 284
Target Start/End: Original strand, 5930408 - 5930496
Alignment:
Q  196 caaagaaaggagatttaaggtaaatctttgaaccaaagtcattcatctaattagtttttctcattcacttttatttaaataagtgattt 284  Q
    |||||| ||| |||||| ||| ||| ||||| ||||| |||| | ||||| | ||||||||  ||| ||||||||| ||||||||||||    
T  5930408 caaagagaggtgatttagggttaatttttgacccaaaatcatccctctaactcgtttttctgtttcccttttatttcaataagtgattt 5930496  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 35664477 - 35664413
Alignment:
Q  22 ttttgtacttaatttttaggtc-taggacggccgccctccttgccctgcctcagatacggccctg 85  Q
    ||||||||||| |||||||| | |||| ||| ||||||| | |||||||||||||||||| ||||    
T  35664477 ttttgtacttattttttagggcctagggcggtcgccctcttcgccctgcctcagatacggtcctg 35664413  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 30992748 - 30992700
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    |||||||||||||||||||||||||||||| | |||| |||| ||||||    
T  30992748 gttcagattgtcagatcaacttcgatctagtgcagatccaatcaatgac 30992700  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 284
Target Start/End: Original strand, 35562432 - 35562467
Alignment:
Q  249 gtttttctcattcacttttatttaaataagtgattt 284  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35562432 gtttttctcattctcttttatttaaataagtgattt 35562467  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 3412289 - 3412331
Alignment:
Q  43 ctaggacggccgccctccttgccctgcctcagatacggccctg 85  Q
    ||||||||| ||||||| | |||||||||||||||||||||||    
T  3412289 ctaggacggtcgccctcttcgccctgcctcagatacggccctg 3412331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 25855338 - 25855261
Alignment:
Q  207 gatttaaggtaaatctttgaaccaaagtcattcatctaattagtttttctcattcacttttatttaaataagtgattt 284  Q
    |||||| ||| ||| ||||| ||||| |||| | ||||| | ||||||||| ||| |||||||| |||||||||||||    
T  25855338 gatttagggtcaatttttgatccaaaatcatccctctaactcgtttttctctttcccttttattgaaataagtgattt 25855261  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 21329222 - 21329194
Alignment:
Q  356 ttcagattgtcagatcaacttcgatctag 384  Q
    |||||||||||||||||||||||||||||    
T  21329222 ttcagattgtcagatcaacttcgatctag 21329194  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 24045204 - 24045164
Alignment:
Q  356 ttcagattgtcagatcaacttcgatctagagtagattcaat 396  Q
    ||||||||||||||||||||| ||||||| | |||||||||    
T  24045204 ttcagattgtcagatcaacttagatctagtgcagattcaat 24045164  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 40775456 - 40775504
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    |||||||||||||||||| ||||||||||| | |||| |||| ||||||    
T  40775456 gttcagattgtcagatcagcttcgatctagtgcagatccaatcaatgac 40775504  T

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Target: scaffold0157 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Complemental strand, 1066 - 1015
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgacatt 406  Q
    ||||| |||||||||||||||||||||||| | |||| |||| |||||||||    
T  1066 gttcaaattgtcagatcaacttcgatctagtgcagatccaatcaatgacatt 1015  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 12519845 - 12519896
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgacatt 406  Q
    ||||| |||||||||||||||||||||||| | |||| |||| |||||||||    
T  12519845 gttcaaattgtcagatcaacttcgatctagtgcagatccaatcaatgacatt 12519896  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 20961638 - 20961685
Alignment:
Q  356 ttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||    
T  20961638 ttcagattgtcagatcaacttcgatccagtgcagattcaatcaatgac 20961685  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 9474464 - 9474416
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    |||||||||||| |||||||||||||| || |||||| |||| ||||||    
T  9474464 gttcagattgtctgatcaacttcgatccagtgtagatccaatcaatgac 9474416  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 28990323 - 28990371
Alignment:
Q  236 attcatctaattagtttttctcattcacttttatttaaataagtgattt 284  Q
    |||||||||| | ||||||||| ||| |||||||| |||||||||||||    
T  28990323 attcatctaactcgtttttctctttctcttttattgaaataagtgattt 28990371  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 31601281 - 31601233
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    ||||||||||||||||||||||||||| || | |||| |||| ||||||    
T  31601281 gttcagattgtcagatcaacttcgatccagtgcagatccaatcaatgac 31601233  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 42972227 - 42972275
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    ||||||||||||||||||||||||||| || | |||| |||| ||||||    
T  42972227 gttcagattgtcagatcaacttcgatccagtgcagatccaatcaatgac 42972275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 403
Target Start/End: Complemental strand, 54420665 - 54420617
Alignment:
Q  356 ttcagattgtcagatcaac-ttcgatctagagtagattcaataaatgac 403  Q
    ||||||||||||||||||| |||||||||| | ||||||||| ||||||    
T  54420665 ttcagattgtcagatcaactttcgatctagtgcagattcaatcaatgac 54420617  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 9107226 - 9107272
Alignment:
Q  39 aggtctaggacggccgccctccttgccctgcctcagatacggccctg 85  Q
    ||||||||||||| ||| ||| | |||||||||||||||||||||||    
T  9107226 aggtctaggacggtcgcgctcttcgccctgcctcagatacggccctg 9107272  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 20201176 - 20201099
Alignment:
Q  207 gatttaaggtaaatctttgaaccaaagtcattcatctaattagtttttctcattcacttttatttaaataagtgattt 284  Q
    |||||| ||| ||| ||||| ||||| |||  | ||||| | ||||||||| |||||||||||| |||||||||||||    
T  20201176 gatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttcacttttattgaaataagtgattt 20201099  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 20203358 - 20203281
Alignment:
Q  207 gatttaaggtaaatctttgaaccaaagtcattcatctaattagtttttctcattcacttttatttaaataagtgattt 284  Q
    |||||| ||| ||| ||||| ||||| |||  | ||||| | ||||||||| |||||||||||| |||||||||||||    
T  20203358 gatttagggtcaatttttgacccaaaatcacccctctaactcgtttttctctttcacttttattgaaataagtgattt 20203281  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 7049434 - 7049482
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    ||||||||||||||||||||||||||| || | |||| |||| ||||||    
T  7049434 gttcagattgtcagatcaacttcgatccagtgcagatgcaatcaatgac 7049482  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 20845197 - 20845245
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    ||||||||||||||||||||||||||| || | |||| |||| ||||||    
T  20845197 gttcagattgtcagatcaacttcgatccagtgcagatccaatcaatgac 20845245  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 23843349 - 23843301
Alignment:
Q  355 gttcagattgtcagatcaacttcgatctagagtagattcaataaatgac 403  Q
    |||||||||||||||||| |||||||| || | ||||||||| ||||||    
T  23843349 gttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgac 23843301  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 384
Target Start/End: Complemental strand, 12147972 - 12147944
Alignment:
Q  356 ttcagattgtcagatcaacttcgatctag 384  Q
    |||||||||||||||||||||||||||||    
T  12147972 ttcagattgtcagatcaacttcgatctag 12147944  T

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