View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_51 (Length: 427)
Name: NF18404_high_51
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_51 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 417
Target Start/End: Original strand, 39782447 - 39782846
Alignment:
| Q |
20 |
aagtgcacatgggtgggtattccggtcaacgattcaaattgtagtactggtagtagtaacaactccctgtattaaaaggatgtattctattaaaaatcgt |
119 |
Q |
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| T |
39782447 |
aagtgcacatgggtgggtattccggtcaacgattcaaattgtagtactggtagtagtaacaactccctgtattaaaaggatgtattctattaaaaatcgt |
39782546 |
T |
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| Q |
120 |
gtgtttctcttgcactcttaccatttcacaaaacctttatcatggtaggtactaatagtgtctactcacttctttctatcaacgtaactataataacaag |
219 |
Q |
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| T |
39782547 |
gcgtttctcttgcactcttaccatttcacaaaacctttatcatggtaggtactaatagtgtctactcacttctttctatcaacgtaactataataacaag |
39782646 |
T |
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| Q |
220 |
taacaagtcatactaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgagatata |
319 |
Q |
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| T |
39782647 |
taacaagtcatcctaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgagatata |
39782746 |
T |
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| Q |
320 |
atgaatgaaacaacttcgctaatcgcacctaaaatttcatccaattttttgttaagcattcctcttcat--ctcactcgactgtgaaactctttcctatg |
417 |
Q |
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| T |
39782747 |
atgaatgaaacaacttcactaatcgcacctaaaatttcatccaattttttgttaagcattcctcttcattaatcattcgactgtgaaactctttcctatg |
39782846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 69 - 330
Target Start/End: Original strand, 39788945 - 39789213
Alignment:
| Q |
69 |
gtagtagtaacaactccctgtattaaaaggatgtattctattaaaaatcgtgtgtttctcttgcactcttaccatttcacaaaacctttatcatggtagg |
168 |
Q |
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| T |
39788945 |
gtagtagtaaaaactcgccggattaaaatgaagtattctattaaaaatcgagtgtttctcttgcatacttaccatttcaaaaaacctttatcatgatagg |
39789044 |
T |
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| Q |
169 |
tactaatag----------tgtctactcacttctttctatcaacgtaactataataacaagtaacaagtcatactaacaataaatcaagtttttatacat |
258 |
Q |
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| T |
39789045 |
tactaatagattcctaaataatctagtcacttctttctatcaac-taagagtaacaagtaacaacaattcatcctaacaataaaccaagtttgtaaacat |
39789143 |
T |
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| Q |
259 |
atgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgagatataatgaatgaaac |
330 |
Q |
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| T |
39789144 |
atgcatgttgatatcc--tttttttgtcaatttaaacctattctattttagaccagatataatgaattaaac |
39789213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 343
Target Start/End: Original strand, 39793850 - 39793976
Alignment:
| Q |
216 |
caagtaacaagtcatactaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgaga |
315 |
Q |
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| T |
39793850 |
caagtaacaactcatcctaacagtaaaccaagtttatatacatatgcaagttgttattc--tttttctgtcaatttcaacctattatattctttaccagt |
39793947 |
T |
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| Q |
316 |
tataatgaatg-aaacaacttcgctaatc |
343 |
Q |
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| T |
39793948 |
tataatgaatgaaaacaacttcgttaatc |
39793976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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