View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_52 (Length: 425)
Name: NF18404_high_52
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 17895378 - 17894982
Alignment:
| Q |
18 |
ttgatttcataattgtgttgtttgtatggnnnnnnnatagcaaacacttgatgagataagacatgagaatactggtaatggtgattgtgaatggtgaagg |
117 |
Q |
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| T |
17895378 |
ttgatttcatgattgtgttgtttatatggtttttt-atagcaaacacttgatgagataagacatgagaatactggtaatggtgattgtgaatggtgaagg |
17895280 |
T |
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| Q |
118 |
tgttaatgtacgtgatgctaaaggacgactttctacagaagtaggggatgcgaatcttggcaattatgtggttgataagaatgcgttaacgatgaagatg |
217 |
Q |
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| T |
17895279 |
tgttaatgtacgtgatgctaaaggacgactttctacagaagtaggggatgcgaatcttggcaattatgtggttgataagaatgcgttaacgatgaagatg |
17895180 |
T |
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| Q |
218 |
tggaatttcaagtaagcgaatatgatgataatgagtctggtgatagtgatagtgattatgttgatggtgaggagtgttttgatagagatgcaaacaacaa |
317 |
Q |
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| T |
17895179 |
tggaatttcaagtaagcgaatatgatgataatgagtctggtgatagtgatagtgattatgtt-atggtgaggagtgttttgacagagatgcaaacaacaa |
17895081 |
T |
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| Q |
318 |
cgacaccaatgttgatgatttcgacgaaaattcaaatagtttcaatgaatcaacatacaaagatcaaaatctagacgaatcttacttaattgatgatgt |
416 |
Q |
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| T |
17895080 |
cgacaccaatgttgacgatttcgacgaaaattcaaatagtttcaatgaatcaacatacaaagatcaaaatctagacgaatcttacttaattgatgatgt |
17894982 |
T |
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