View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_55 (Length: 418)
Name: NF18404_high_55
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 2929571 - 2929188
Alignment:
| Q |
14 |
gagatgaaagttacagaaagactaacgaactaatttaaggatattgcatcttaatacatcaaatagaagcttaagagctcacgaagaataagaagattat |
113 |
Q |
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| T |
2929571 |
gagaagaaagttacaaaaagactaacgaactaatttagggatattgcatcttaatacatcaaatagaagcttaagagctcacgaagaataagaagattat |
2929472 |
T |
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| Q |
114 |
cgtccagagaaagaagcattgtgtctccaatttgttaagaaaatcagttcaagagttaatctccttgtaaatatgtttgaa--ctagacatactttcttt |
211 |
Q |
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| T |
2929471 |
cgtccagagaaagaagcattgtgtctccaattt---aagaaaatcagtacaagagttaatctccttgtaaatatgtttgaattctagacatactttcttt |
2929375 |
T |
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| Q |
212 |
cttaaaatttaacatgattgcatttgtgttttgtataagatttgctactagcttgagcggaaggtcgctaaagtccttagtatatatctccatataccat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2929374 |
cttaaaatttaacatgattgcatttgtgttttgtataagatttgctactagcttgagcggaaggtcgctaaagtccttagtatatatctccatataccat |
2929275 |
T |
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| Q |
312 |
tctaataaataagtcccatatttagtttattaattttatggcattgtcttcaattcatatatgaaatcaaagtccgtagtcactaattttt |
402 |
Q |
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| T |
2929274 |
tcta----ataagtcccatatttagtttattaattttatggcattgtcttcaattcatatatgaaatcaaagtccttagtcactaattttt |
2929188 |
T |
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