View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_58 (Length: 412)
Name: NF18404_high_58
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_58 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 5202308 - 5202496
Alignment:
| Q |
1 |
attaatatttgacgaataaatttttatcatatctcaatatctacttgacaatgnnnnnnnnnnnnnnnnnnnnnngatgaatctacctgacaatgataaa |
100 |
Q |
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| T |
5202308 |
attaatatttgacgaataaatttttatcatatctcaatatctacttgacaatgtttttgtttttgtttttcttttgatgaatctacttgacaatgataaa |
5202407 |
T |
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| Q |
101 |
aataaatttgtaaatgatactccacttatatcacttgtggaccgtaaagttatcctataaatcaaagtcttaaaatttctagagtcttg |
189 |
Q |
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| T |
5202408 |
aataaatttgtatatgatactccacttatatcacttgtggaccgtaaagttatcctataaatcaaagtcttaaaatttctagagtcttg |
5202496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 341
Target Start/End: Original strand, 5202570 - 5202648
Alignment:
| Q |
263 |
tgtctttaactttgttacagacgtcaaaattagagaattattttttcattaattttatttcttaaaaaatttggttagt |
341 |
Q |
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| T |
5202570 |
tgtctttaactttgttacagacgtcaaaatcagagatttatttattcattaattttatttcttaaaaaatttggttagt |
5202648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 5202736 - 5202789
Alignment:
| Q |
359 |
taatagatatgagtaataaagtaaacaaattaataatagatattttaaccacct |
412 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5202736 |
taataaatatgagtaataaagtaaacaaattaataatagatattttaaccacct |
5202789 |
T |
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