View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_high_59 (Length: 411)

Name: NF18404_high_59
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_high_59
NF18404_high_59
[»] chr5 (19 HSPs)
chr5 (1-347)||(2065254-2065602)
chr5 (3-158)||(12422771-12422927)
chr5 (233-323)||(12422601-12422689)
chr5 (356-393)||(14347578-14347615)
chr5 (356-393)||(28905299-28905336)
chr5 (356-393)||(28941694-28941731)
chr5 (356-393)||(39548442-39548479)
chr5 (351-393)||(6794621-6794663)
chr5 (356-393)||(13823879-13823916)
chr5 (356-393)||(13824487-13824524)
chr5 (356-393)||(19797843-19797880)
chr5 (356-393)||(24041917-24041954)
chr5 (356-393)||(24042521-24042558)
chr5 (360-393)||(30645568-30645601)
chr5 (351-393)||(23082712-23082754)
chr5 (351-393)||(37191768-37191810)
chr5 (351-393)||(38385042-38385084)
chr5 (360-389)||(38385647-38385676)
chr5 (351-392)||(42767545-42767586)
[»] chr3 (8 HSPs)
chr3 (3-158)||(30626892-30627049)
chr3 (219-344)||(30627121-30627244)
chr3 (356-393)||(34817510-34817547)
chr3 (347-393)||(32305112-32305158)
chr3 (347-393)||(42541042-42541088)
chr3 (360-393)||(52254463-52254496)
chr3 (360-391)||(53228055-53228086)
chr3 (360-393)||(52255372-52255405)
[»] chr1 (18 HSPs)
chr1 (3-147)||(38460177-38460326)
chr1 (233-344)||(38459972-38460081)
chr1 (233-344)||(38460930-38461039)
chr1 (3-64)||(38459830-38459891)
chr1 (62-147)||(38460748-38460834)
chr1 (351-393)||(36142284-36142326)
chr1 (347-393)||(51242819-51242865)
chr1 (356-393)||(16659746-16659783)
chr1 (356-393)||(31697294-31697331)
chr1 (356-393)||(38658718-38658755)
chr1 (356-393)||(49652577-49652614)
chr1 (356-393)||(51241903-51241940)
chr1 (360-393)||(24508392-24508425)
chr1 (360-393)||(50123878-50123911)
chr1 (356-393)||(968070-968107)
chr1 (360-393)||(50124443-50124476)
chr1 (360-393)||(52751404-52751437)
chr1 (360-392)||(52750335-52750367)
[»] chr4 (19 HSPs)
chr4 (3-155)||(8719185-8719342)
chr4 (233-323)||(8719014-8719102)
chr4 (351-393)||(40680639-40680681)
chr4 (356-393)||(2734976-2735013)
chr4 (356-393)||(11108471-11108508)
chr4 (356-393)||(24296998-24297035)
chr4 (356-393)||(43630163-43630200)
chr4 (357-393)||(53596014-53596050)
chr4 (351-393)||(9087179-9087221)
chr4 (346-392)||(13630260-13630306)
chr4 (360-393)||(13631643-13631676)
chr4 (360-393)||(50281863-50281896)
chr4 (360-393)||(50282774-50282807)
chr4 (360-393)||(9091608-9091641)
chr4 (360-393)||(26280256-26280289)
chr4 (356-393)||(26281093-26281130)
chr4 (360-393)||(44182745-44182778)
chr4 (360-393)||(45044551-45044584)
chr4 (360-389)||(45045134-45045163)
[»] chr8 (6 HSPs)
chr8 (351-393)||(13462279-13462321)
chr8 (356-393)||(16906306-16906343)
chr8 (358-393)||(9319178-9319213)
chr8 (356-393)||(22594500-22594537)
chr8 (363-393)||(44553314-44553344)
chr8 (356-393)||(13364228-13364265)
[»] chr7 (14 HSPs)
chr7 (347-393)||(17236233-17236279)
chr7 (351-393)||(30765842-30765884)
chr7 (356-393)||(42754094-42754131)
chr7 (351-393)||(17278573-17278615)
chr7 (352-393)||(8684893-8684934)
chr7 (360-393)||(14682080-14682113)
chr7 (360-393)||(14682835-14682868)
chr7 (360-393)||(17238480-17238513)
chr7 (356-393)||(18297333-18297370)
chr7 (362-393)||(16956115-16956146)
chr7 (362-393)||(30474461-30474492)
chr7 (356-393)||(25443175-25443212)
chr7 (356-393)||(25444921-25444958)
chr7 (360-393)||(30475012-30475045)
[»] chr6 (8 HSPs)
chr6 (351-393)||(12261332-12261374)
chr6 (356-393)||(12587711-12587748)
chr6 (351-393)||(27129018-27129060)
chr6 (360-393)||(902595-902628)
chr6 (356-393)||(16146256-16146293)
chr6 (360-392)||(8850401-8850433)
chr6 (360-392)||(28865781-28865813)
chr6 (347-393)||(901589-901635)
[»] chr2 (12 HSPs)
chr2 (351-393)||(19298411-19298453)
chr2 (351-393)||(20685802-20685844)
chr2 (351-393)||(28189621-28189663)
chr2 (351-393)||(40468939-40468981)
chr2 (356-393)||(8885837-8885874)
chr2 (356-393)||(12601416-12601453)
chr2 (351-393)||(8029851-8029893)
chr2 (356-393)||(8892903-8892940)
chr2 (356-393)||(10708305-10708342)
chr2 (356-393)||(12602439-12602476)
chr2 (356-389)||(16330684-16330717)
chr2 (351-393)||(29519888-29519930)
[»] scaffold0259 (1 HSPs)
scaffold0259 (356-393)||(12214-12251)
[»] scaffold0202 (1 HSPs)
scaffold0202 (356-393)||(22048-22085)
[»] scaffold0150 (1 HSPs)
scaffold0150 (356-392)||(39061-39097)
[»] scaffold0192 (1 HSPs)
scaffold0192 (356-393)||(14543-14580)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 2065254 - 2065602
Alignment:
Q  1 tcaattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaattcaccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2065254 tcaattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaattcacca 2065353  T
Q  101 gcagaaggnnnnnnn-tgttgctttctttgccaaatctcacgacagtgctgcaattaatatannnnnnnn---aacactatggatagaggaacgatggat 196  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  2065354 gcagaaggaaaaaaaatgttgctttctttgccaaatctcacgacagtgctgcaattaatatatttttttttataacactatggatagaggaacgatggat 2065453  T
Q  197 agaagccatgaatagaggaacgatggtgtttgatgagatgtgatggaattgctgttaatgtttttattttatatttaaaaaagacaaaaacaatgtgtta 296  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  2065454 agaagccatgaatagaggaacgatggtgtttgacgagatgtgatggagttgctgttaatgtttttattt--tatttaaaaaagacaaaaacaatgtgtta 2065551  T
Q  297 ttttgcaacaggtacaaccgattactagccgaagggaaagagaaatgggat 347  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  2065552 ttttgcaacaggtacaaccgattactagttgaagggaaagagaaatgggat 2065602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 12422927 - 12422771
Alignment:
Q  3 aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataaaaattgctgctttcacccaattcacccgc 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||  ||    
T  12422927 aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatgataaaaataaattgctgctttcacccaattcactagc 12422828  T
Q  103 agaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaattaat 158  Q
    ||||||        |||||||||||||||||||||||||||| ||| ||||||||||    
T  12422827 agaaggaaaaaaattgttgctttctttgccaaatctcacgacggtgttgcaattaat 12422771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 12422689 - 12422601
Alignment:
Q  233 gatgtgatggaattgctgttaatgtttttattttatatttaaaaaagacaaaaacaatgtgttattttgcaacaggtacaaccgattacta 323  Q
    |||||||| || ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  12422689 gatgtgatagagttgctgttaatgtttttattttat--ttaaaaaagacaaaaacaatgtgttatattgcaacaggtacaaccggttacta 12422601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 14347578 - 14347615
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14347578 atcctcttcttcatgatcttcatcatcaacaacacacc 14347615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 28905336 - 28905299
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28905336 atcctcttcttcatgatcttcatcatcaacaacacacc 28905299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 28941731 - 28941694
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28941731 atcctcttcttcatgatcttcatcatcaacaacacacc 28941694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 39548479 - 39548442
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39548479 atcctcttcttcatgatcttcatcatcaacaacacacc 39548442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 6794663 - 6794621
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  6794663 tttccatcctcctcttcatgatcttcatcatcaacaacacacc 6794621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 13823879 - 13823916
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||| |||||||||||||||||||||||||||||||    
T  13823879 atcctcctcttcatgatcttcatcatcaacaacacacc 13823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 13824524 - 13824487
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  13824524 atcctcttcttcatgatcttcatcatcaataacacacc 13824487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 19797843 - 19797880
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| |||||||||||||||||||||||||||||||||    
T  19797843 atccccttcttcatgatcttcatcatcaacaacacacc 19797880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 24041917 - 24041954
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  24041917 atcctcttcttcatgatcttcatcatcaataacacacc 24041954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 24042558 - 24042521
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24042558 atcctcctcttcatgatcttcatcatcaacaacacacc 24042521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 30645601 - 30645568
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  30645601 tcttcttcatgatcttcatcatcaacaacacacc 30645568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 23082712 - 23082754
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| |||||||||| |||||||||||||||||||||||    
T  23082712 tttccatcatcttcttcataatcttcatcatcaacaacacacc 23082754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 37191768 - 37191810
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||    
T  37191768 tttccatcatcttcatcatgatcttcatcatcaacaacacacc 37191810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 38385042 - 38385084
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| |||||||||| |||||||||||||||||||||||    
T  38385042 tttccatcatcttcttcataatcttcatcatcaacaacacacc 38385084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 389
Target Start/End: Complemental strand, 38385676 - 38385647
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaaca 389  Q
    ||||||||||||||||||||||||||||||    
T  38385676 tcttcttcatgatcttcatcatcaacaaca 38385647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 42767586 - 42767545
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacac 392  Q
    |||| ||| ||||| |||||||||||||||||||||||||||    
T  42767586 tttccatcatcttcatcatgatcttcatcatcaacaacacac 42767545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 30626892 - 30627049
Alignment:
Q  3 aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactatgataaataa-aaattgctgctttcacccaattcacccg 101  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||  |    
T  30626892 aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatgataaaaaatagattgctgctttcacccaattcactag 30626991  T
Q  102 cagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaattaat 158  Q
    |||||||        |||||||||||||||||||||||||||||||| ||||||||||    
T  30626992 cagaaggaaaaaaattgttgctttctttgccaaatctcacgacagtgttgcaattaat 30627049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 30627121 - 30627244
Alignment:
Q  219 atggtgtttgatgagatgtgatggaattgctgttaatgtttttattttatatttaaaaaagacaaaaacaatgtgttattttgcaacaggtacaaccgat 318  Q
    |||| |||||| | |||||||| || ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||| |    
T  30627121 atggagtttgacgtgatgtgatagagttgctgttaatgtttttattttat--ttaaaaaagacaaaaacaatgtgttatattgcaacaggtacaaccggt 30627218  T
Q  319 tactagccgaagggaaagagaaatgg 344  Q
    ||||||   |||||||| ||||||||    
T  30627219 tactaggtaaagggaaaaagaaatgg 30627244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 34817510 - 34817547
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34817510 atcctcttcttcatgatcttcatcatcaacaacacacc 34817547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 32305158 - 32305112
Alignment:
Q  347 tctttttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||    
T  32305158 tcttttttcatcatcttcttcatgatcttcatcatcaacaacacacc 32305112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 42541088 - 42541042
Alignment:
Q  347 tctttttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||  ||| ||||||||||||||||||||||||||||||||||    
T  42541088 tcttttttcatcatcttcttcatgatcttcatcatcaacaacacacc 42541042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 52254463 - 52254496
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  52254463 tcttcttcatgatcttcatcatcaacaacacacc 52254496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 360 - 391
Target Start/End: Complemental strand, 53228086 - 53228055
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacaca 391  Q
    ||||||||||||||||||||||||||||||||    
T  53228086 tcttcttcatgatcttcatcatcaacaacaca 53228055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 52255405 - 52255372
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||| ||||||||||||||||||||    
T  52255405 tcttcttcatgattttcatcatcaacaacacacc 52255372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 38460326 - 38460177
Alignment:
Q  3 aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaac----tatgataaataaaaattgctgctttcacccaattcac 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    ||||||||| | |||||||||||||||||||||||||    
T  38460326 aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactatatatgataaaaataaattgctgctttcacccaattcac 38460227  T
Q  99 ccgcagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtg 147  Q
      ||||||||        ||||||||||||||||||||||||||||||||    
T  38460226 tagcagaaggaaaaaatttgttgctttctttgccaaatctcacgacagtg 38460177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 233 - 344
Target Start/End: Complemental strand, 38460081 - 38459972
Alignment:
Q  233 gatgtgatggaattgctgttaatgtttttattttatatttaaaaaagacaaaaacaatgtgttattttgcaacaggtacaaccgattactagccgaaggg 332  Q
    |||||||| || ||| ||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||| |||||||   |||||    
T  38460081 gatgtgatagagttgttgttaatgtttttattttat--ttaaaaaagacaaaaacaatgtgttatattgcaacaggtataaccggttactaggtaaaggg 38459984  T
Q  333 aaagagaaatgg 344  Q
    ||| ||||||||    
T  38459983 aaaaagaaatgg 38459972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 233 - 344
Target Start/End: Original strand, 38460930 - 38461039
Alignment:
Q  233 gatgtgatggaattgctgttaatgtttttattttatatttaaaaaagacaaaaacaatgtgttattttgcaacaggtacaaccgattactagccgaaggg 332  Q
    |||||||| || ||| ||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||| |||||||   |||||    
T  38460930 gatgtgatagagttgttgttaatgtttttattttat--ttaaaaaagacaaaaacaatgtgttatattgcaacaggtataaccggttactaggtaaaggg 38461027  T
Q  333 aaagagaaatgg 344  Q
    ||| ||||||||    
T  38461028 aaaaagaaatgg 38461039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 38459830 - 38459891
Alignment:
Q  3 aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaactat 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38459830 aattagaactgttggagaagggaactgaaattgagaacaagaatggggagaaatggaactat 38459891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 38460748 - 38460834
Alignment:
Q  62 tatgataaataaaaattgctgctttcacccaattcacccgcagaaggnnnnnnnt-gttgctttctttgccaaatctcacgacagtg 147  Q
    ||||||||| | |||||||||||||||||||||||||  ||||||||       | |||||||||||||||||||||||||||||||    
T  38460748 tatgataaaaataaattgctgctttcacccaattcactagcagaaggaaaaaatttgttgctttctttgccaaatctcacgacagtg 38460834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 36142284 - 36142326
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  36142284 tttccatcctcttcttcatgatcttcatcatcaacaacacacc 36142326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 393
Target Start/End: Complemental strand, 51242865 - 51242819
Alignment:
Q  347 tctttttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  51242865 tcttcttccatcctcttcttcatgatcttcatcatcaacaacacacc 51242819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 16659783 - 16659746
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16659783 atcctcttcttcatgatcttcatcatcaacaacacacc 16659746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 31697294 - 31697331
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31697294 atcctcttcttcatgatcttcatcatcaacaacacacc 31697331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 38658755 - 38658718
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38658755 atcctcttcttcatgatcttcatcatcaacaacacacc 38658718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 49652577 - 49652614
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49652577 atcctcttcttcatgatcttcatcatcaacaacacacc 49652614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 51241903 - 51241940
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51241903 atcctcttcttcatgatcttcatcatcaacaacacacc 51241940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 24508392 - 24508425
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  24508392 tcttcttcatgatcttcatcatcaacaacacacc 24508425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 50123878 - 50123911
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  50123878 tcttcttcatgatcttcatcatcaacaacacacc 50123911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 968070 - 968107
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||||||||||||||||||| || ||||||||    
T  968070 atcctcttcttcatgatcttcatcataaaaaacacacc 968107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 50124476 - 50124443
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||| |||||||||||||||||||||||    
T  50124476 tcttcttcataatcttcatcatcaacaacacacc 50124443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 52751437 - 52751404
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||| ||||||||||||||||||||    
T  52751437 tcttcttcatgattttcatcatcaacaacacacc 52751404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 52750335 - 52750367
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacac 392  Q
    |||| ||||||||||||||||||||||||||||    
T  52750335 tctttttcatgatcttcatcatcaacaacacac 52750367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 8719342 - 8719185
Alignment:
Q  3 aattagaactgttggagaagggaattgaaattgagaacaagaatggggagaaatggaac----tatgataaataaaaattgctgctttcacccaattcac 98  Q
    ||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||    ||||||||| | |||||||||||||||||||||||||    
T  8719342 aattacaattgttggagaagggaactgaaattgagaacaataatggggagaaatggaactatatatgataaaaataaattgctgctttcacccaattcac 8719243  T
Q  99 ccgcagaagg-nnnnnnntgttgctttctttgccaaatctcacgacagtgctgcaatt 155  Q
      ||||||||        |||||||||||||||||||||||||||||||| |||||||    
T  8719242 tagcagaaggaaaaaaattgttgctttctttgccaaatctcacgacagtgttgcaatt 8719185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 8719102 - 8719014
Alignment:
Q  233 gatgtgatggaattgctgttaatgtttttattttatatttaaaaaagacaaaaacaatgtgttattttgcaacaggtacaaccgattacta 323  Q
    |||||||| || ||| ||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  8719102 gatgtgatagagttgttgttaatgtttttattttat--ttaaaaaagacaaaaacaatgtgttatattgcaacaggtacaaccggttacta 8719014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 40680639 - 40680681
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  40680639 tttccatcctcttcttcatgatcttcatcatcaacaacacacc 40680681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 2734976 - 2735013
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2734976 atcctcttcttcatgatcttcatcatcaacaacacacc 2735013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 11108471 - 11108508
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11108471 atcctcttcttcatgatcttcatcatcaacaacacacc 11108508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 24297035 - 24296998
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24297035 atcctcttcttcatgatcttcatcatcaacaacacacc 24296998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 43630200 - 43630163
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43630200 atcctcttcttcatgatcttcatcatcaacaacacacc 43630163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 53596050 - 53596014
Alignment:
Q  357 tcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||||||||||||||||||||||||||||||    
T  53596050 tcctcttcttcatgatcttcatcatcaacaacacacc 53596014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 9087221 - 9087179
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  9087221 tttctatcatcttcttcatgatcttcatcatcaacaacacacc 9087179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 346 - 392
Target Start/End: Original strand, 13630260 - 13630306
Alignment:
Q  346 atctttttcaatcctcttcttcatgatcttcatcatcaacaacacac 392  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||||||    
T  13630260 atcttcttccatcatcttcttcatgatcttcatcatcaacaacacac 13630306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 13631676 - 13631643
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  13631676 tcttcttcatgatcttcatcatcaacaacacacc 13631643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 50281863 - 50281896
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  50281863 tcttcttcatgatcttcatcatcaacaacacacc 50281896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 50282807 - 50282774
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  50282807 tcttcttcatgatcttcatcatcaacaacacacc 50282774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 9091608 - 9091641
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| |||||||||||||||||||||||||||||    
T  9091608 tcttattcatgatcttcatcatcaacaacacacc 9091641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 26280256 - 26280289
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||| ||||||||    
T  26280256 tcttcttcatgatcttcatcatcaaaaacacacc 26280289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 26281130 - 26281093
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  26281130 atccccttcttcatgatcgtcatcatcaacaacacacc 26281093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 44182745 - 44182778
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||||||||||||||||||||| |||||    
T  44182745 tcttcttcatgatcttcatcatcaacaaaacacc 44182778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 45044551 - 45044584
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||| |||||||||||||||||||||||    
T  45044551 tcttcttcataatcttcatcatcaacaacacacc 45044584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 389
Target Start/End: Complemental strand, 45045163 - 45045134
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaaca 389  Q
    ||||||||||||||||||||||||||||||    
T  45045163 tcttcttcatgatcttcatcatcaacaaca 45045134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 13462279 - 13462321
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  13462279 tttcaatcatcttcttcatgatcttcatcatcaacaacacacc 13462321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 16906343 - 16906306
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16906343 atcctcttcttcatgatcttcatcatcaacaacacacc 16906306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 393
Target Start/End: Complemental strand, 9319213 - 9319178
Alignment:
Q  358 cctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||    
T  9319213 cctcttcttcatgatcttcatcatcaacaacacacc 9319178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 22594500 - 22594537
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  22594500 atcctcttcatcatgatcttcatcatcaacaacacacc 22594537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 393
Target Start/End: Original strand, 44553314 - 44553344
Alignment:
Q  363 tcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||||||||||||||||||||||||    
T  44553314 tcttcatgatcttcatcatcaacaacacacc 44553344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 13364228 - 13364265
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  13364228 atcctcctcttcatgatcttcatcatcaacagcacacc 13364265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 17236233 - 17236279
Alignment:
Q  347 tctttttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  17236233 tctttttccatcatcttcttcatgatcttcatcatcaacaacacacc 17236279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 30765842 - 30765884
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  30765842 tttccatcctcttcttcatgatcttcatcatcaacaacacacc 30765884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 42754094 - 42754131
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42754094 atcctcttcttcatgatcttcatcatcaacaacacacc 42754131  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 17278573 - 17278615
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  17278573 tttccatcatcttcttcatgatcttcatcatcaacaacacacc 17278615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 393
Target Start/End: Original strand, 8684893 - 8684934
Alignment:
Q  352 ttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  8684893 ttcaattctcttcttcatgatctttatcatcaacaacacacc 8684934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 14682080 - 14682113
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  14682080 tcttcttcatgatcttcatcatcaacaacacacc 14682113  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 14682868 - 14682835
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  14682868 tcttcttcatgatcttcatcatcaacaacacacc 14682835  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 17238513 - 17238480
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  17238513 tcttcttcatgatcttcatcatcaacaacacacc 17238480  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 18297333 - 18297370
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  18297333 atcctcttcttcatgatcttcatcatcaaaaacacacc 18297370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 393
Target Start/End: Original strand, 16956115 - 16956146
Alignment:
Q  362 ttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||    
T  16956115 ttcttcatgatcttcatcatcaacaacacacc 16956146  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 362 - 393
Target Start/End: Original strand, 30474461 - 30474492
Alignment:
Q  362 ttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||    
T  30474461 ttcttcatgatcttcatcatcaacaacacacc 30474492  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 25443175 - 25443212
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||| || |||||    
T  25443175 atcctcttcttcatgatcttcatcatcaaaaatacacc 25443212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 25444958 - 25444921
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  25444958 atcctcttcttcatgatcttcgtcatcaaaaacacacc 25444921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 30475045 - 30475012
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||| |||||||||||||||||||||||    
T  30475045 tcttcttcataatcttcatcatcaacaacacacc 30475012  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 12261374 - 12261332
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  12261374 tttccatcctcttcttcatgatcttcatcatcaacaacacacc 12261332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 12587748 - 12587711
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12587748 atcctcttcttcatgatcttcatcatcaacaacacacc 12587711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 27129018 - 27129060
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  27129018 tttccatcatcttcttcatgatcttcatcatcaacaacacacc 27129060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 902628 - 902595
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||    
T  902628 tcttcttcatgatcttcatcatcaacaacacacc 902595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 16146256 - 16146293
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  16146256 atcctcttcttcaggatcttcatcatcaacaacacacc 16146293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 8850401 - 8850433
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacac 392  Q
    |||||||||||||||||||||||||||||||||    
T  8850401 tcttcttcatgatcttcatcatcaacaacacac 8850433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 28865781 - 28865813
Alignment:
Q  360 tcttcttcatgatcttcatcatcaacaacacac 392  Q
    |||||||||||||||||||||||||||||||||    
T  28865781 tcttcttcatgatcttcatcatcaacaacacac 28865813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 901589 - 901635
Alignment:
Q  347 tctttttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| ||| |||||||| |||||||||||||||||||||||||    
T  901589 tcttcttccatcatcttcttcctgatcttcatcatcaacaacacacc 901635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 19298453 - 19298411
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  19298453 tttcaatcatcttcttcatgatcttcatcatcaacaacacacc 19298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 20685802 - 20685844
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  20685802 tttccatcctcttcttcatgatcttcatcatcaacaacacacc 20685844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Original strand, 28189621 - 28189663
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  28189621 tttccatcctcttcttcatgatcttcatcatcaacaacacacc 28189663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 40468981 - 40468939
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  40468981 tttccatcctcttcttcatgatcttcatcatcaacaacacacc 40468939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 8885837 - 8885874
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8885837 atcctcttcttcatgatcttcatcatcaacaacacacc 8885874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 12601416 - 12601453
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12601416 atcctcttcttcatgatcttcatcatcaacaacacacc 12601453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 8029893 - 8029851
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  8029893 tttccatcatcttcttcatgatcttcatcatcaacaacacacc 8029851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 8892940 - 8892903
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8892940 atcctcttcttcatgattttcatcatcaacaacacacc 8892903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 10708305 - 10708342
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10708305 atcctcttcttcatgatcttcatcatcaaaaacacacc 10708342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 12602476 - 12602439
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||||||||||||| |||||||||||||||||    
T  12602476 atcctcttcttcatgatctttatcatcaacaacacacc 12602439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 16330717 - 16330684
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaaca 389  Q
    ||||||||||||||||||||||||||||||||||    
T  16330717 atcctcttcttcatgatcttcatcatcaacaaca 16330684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 393
Target Start/End: Complemental strand, 29519930 - 29519888
Alignment:
Q  351 tttcaatcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||| ||| ||||| ||||||||||||||||||||||||||||    
T  29519930 tttccatcatcttcatcatgatcttcatcatcaacaacacacc 29519888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 12214 - 12251
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12214 atcctcttcttcatgatcttcatcatcaacaacacacc 12251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 22085 - 22048
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22085 atcctcttcttcatgatcttcatcatcaacaacacacc 22048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 39061 - 39097
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacac 392  Q
    |||||||||||||||||||||||||||||||||||||    
T  39061 atcctcttcttcatgatcttcatcatcaacaacacac 39097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 14580 - 14543
Alignment:
Q  356 atcctcttcttcatgatcttcatcatcaacaacacacc 393  Q
    |||||||||||||||||||||||||| || ||||||||    
T  14580 atcctcttcttcatgatcttcatcatgaataacacacc 14543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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