View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_6 (Length: 772)
Name: NF18404_high_6
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 603; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 114 - 756
Target Start/End: Complemental strand, 16002262 - 16001615
Alignment:
| Q |
114 |
gcttgaagaaaagcctagtttcaaaggctagcatgatgaaatacattgaatataaatcagttgagcaaataaatgaaaat----gagacaataaaataga |
209 |
Q |
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| T |
16002262 |
gcttgaagaaaagcctagtttcaaaggctagcatgatgaaatacattgaatataaatcagttgaacaaataaatgaaaatcaaggagtcaataaaataga |
16002163 |
T |
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| Q |
210 |
acaaataattattttaacacaagaattaaccaaaaatcagttgattaagtatcaattgatataaccaactgattttttagtatatcaaattattaatgaa |
309 |
Q |
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| T |
16002162 |
acaaataattattttaacacaagaattaaccaaaaatcagttgattaagtatcagttgatataaccaactgattttttagtatatcaaattattaatgaa |
16002063 |
T |
|
| Q |
310 |
ttgaactctctcttgagtgttaactaaaatgtcactcttgagctccacctgagcagaag-ttccattttgatacatcatagaaacagattaataacaaga |
408 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16002062 |
ttgaactctctcttgtgtgttaactaaaatgtcactcttgagctccacctgagcagaagcttccattttgatacatcatagaaacagattaataacaaga |
16001963 |
T |
|
| Q |
409 |
ttctgcaaatggggaataaaactactagaaaacctatgacagatccatatccgacagaaaaatttaaacataagatcagacagtaagtagattaataggg |
508 |
Q |
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| T |
16001962 |
ttctgcaaatggggaataaaactactagaaaacctatgacagatccatatccgacagaaaactttaaacataagatcagacagtaagtagattaataggg |
16001863 |
T |
|
| Q |
509 |
ataaacgtagtgttgttacacatatgatgcagtaatgccaaaatgtatggctcatcgctcgaacttggaaatcaaatcaagcatgtacttgctctctgca |
608 |
Q |
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| T |
16001862 |
ataaacgtagtgttgttacacatatgatgcagtaatgccaaaatgtatggctcatcgctcgaacttggaaatcaaatcaagcatgtacttgctctctgca |
16001763 |
T |
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| Q |
609 |
gagtaattcaccttatctgccttaactactataatcttcaccttctgttcttcaccacataattccttttggattttcagcctaaacacaaactgattga |
708 |
Q |
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| T |
16001762 |
gagtaattcaccttatctgccttaactactataatcttcaccttctgttcttcaccacataattccttttggattttcagcctaaacacaaactgattga |
16001663 |
T |
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| Q |
709 |
agagtatactcttgattatatctctgaacctctcatcatcctcctgct |
756 |
Q |
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| T |
16001662 |
agagtatactcttgattatatctctgaacctctcatcatcctcctgct |
16001615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 16002590 - 16002488
Alignment:
| Q |
13 |
tcatcataactgctctaactaactacatgagcacgaatgaaatgcaaattacaaaatgaaatgtaaatgtggaagttaacttccactccaagctaagtga |
112 |
Q |
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| T |
16002590 |
tcatcataactgctctaactaactacatgagcacgaatgaaatgcaaattacaaaatgaaatgtaaatgtggaagttaacttccactccaagctaagtga |
16002491 |
T |
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| Q |
113 |
agc |
115 |
Q |
| |
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||| |
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| T |
16002490 |
agc |
16002488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 569 - 754
Target Start/End: Original strand, 18101101 - 18101286
Alignment:
| Q |
569 |
gaacttggaaatcaaatcaagcatgtacttgctctctgcagagtaattcaccttatctgccttaactactataatcttcaccttctgttcttcaccacat |
668 |
Q |
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|||||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| | || |
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| T |
18101101 |
gaacttggaaataaaatcaagcatgtacctactctctgcagaataattcaccttatctgccttaactactgtaatcttcaccttctgttcctcattatat |
18101200 |
T |
|
| Q |
669 |
aattccttttggattttcagcctaaacacaaactgattgaagagtatactcttgattatatctctgaacctctcatcatcctcctg |
754 |
Q |
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| T |
18101201 |
aattcctctttgattttcagcctaaacacaaactcattgaagagtctactcttgattatatctccaaacttctcatcatcctcctg |
18101286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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