View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_high_66 (Length: 392)

Name: NF18404_high_66
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_high_66
NF18404_high_66
[»] chr7 (2 HSPs)
chr7 (7-371)||(25683342-25683709)
chr7 (215-262)||(25956279-25956326)
[»] chr1 (2 HSPs)
chr1 (220-287)||(26608221-26608288)
chr1 (215-352)||(37047027-37047163)
[»] chr4 (4 HSPs)
chr4 (240-362)||(5609218-5609339)
chr4 (191-287)||(30738863-30738959)
chr4 (215-282)||(34835564-34835631)
chr4 (240-282)||(39343534-39343575)
[»] chr6 (4 HSPs)
chr6 (194-271)||(28028551-28028628)
chr6 (215-282)||(28672102-28672169)
chr6 (213-274)||(9583406-9583467)
chr6 (240-284)||(14212952-14212996)
[»] chr3 (2 HSPs)
chr3 (230-301)||(8958113-8958183)
chr3 (207-263)||(9345245-9345302)
[»] chr2 (1 HSPs)
chr2 (241-284)||(5608127-5608170)
[»] chr8 (1 HSPs)
chr8 (220-270)||(35588742-35588792)
[»] chr5 (1 HSPs)
chr5 (176-257)||(31669016-31669097)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 7 - 371
Target Start/End: Original strand, 25683342 - 25683709
Alignment:
Q  7 ggagccaagtccaagggttac---acgatcaaagagatgaaaaaattacaaaaactactaaacctgcccaagaaaccaagaacaatatagaacacccgcc 103  Q
    |||||||||| ||||||||||   || |||||| || | |||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||||| |    
T  25683342 ggagccaagtacaagggttactagaccatcaaatagttcaaaaaaatacaaatagtacaaaacctgcccaagaaaccaagaacaatatagaacacccgac 25683441  T
Q  104 cacacaaccctaagactccacatgttacctcaagatacaacctaaatcatttgagaaccacttgtaaaacatccacttgggttaatctaatggtgttgat 203  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  25683442 caaacaaccctaagactccacatgttacctcaagatacaacctaaagcatttgagaaccacttgtaaaacatccacttgggttgatctaatggtgttaat 25683541  T
Q  204 ttaagacttttgagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatgggttaagtccatataaagtcgtgctctagcttca 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25683542 ttaagacttttgagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatggattaagtccatataaagtcgtgctctagcttca 25683641  T
Q  304 aatgaggcccacacaagtggacactaggattgaacccctcagattagtcaatccttggaccaataccg 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  25683642 aatgaggcccacacaagtggacactaggattgaacccctcagattagtcaatctttggatcaataccg 25683709  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 25956326 - 25956279
Alignment:
Q  215 gagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaat 262  Q
    |||| ||||||||||||||||||  |||| ||||||||||||||||||    
T  25956326 gagtgtgctcctctcaaggtcttaggttcaattctccctggtgtcaat 25956279  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 26608221 - 26608288
Alignment:
Q  220 tgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatgggttaagtccatataaag 287  Q
    |||||||||||||||||  |||| ||||||||||| |||||||||  ||| |||||| ||||||||||    
T  26608221 tgctcctctcaaggtctcatgtttgattctccctgatgtcaatttcaatgagttaagcccatataaag 26608288  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 352
Target Start/End: Original strand, 37047027 - 37047163
Alignment:
Q  215 gagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatgggttaagtccatataaagtcgtgctctagcttcaaatgaggccca 314  Q
    |||| |||||||||||||||||   ||| ||||| |||||||   ||||||| |||| || ||||||| | ||   ||||||||||| ||||| |||||     
T  37047027 gagtgtgctcctctcaaggtctcaggtttgattccccctggtacaaattttggtgggcta-gtccatacagagctttgctctagctttaaatggggcccc 37047125  T
Q  315 cacaagtggacactaggattgaacccctcagattagtc 352  Q
    |||||||||||  | |||||| ||||||  ||||||||    
T  37047126 cacaagtggacggtgggattggacccctaggattagtc 37047163  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 362
Target Start/End: Complemental strand, 5609339 - 5609218
Alignment:
Q  240 gttcgattctccctggtgtcaattttgatgggttaagtccatataaagtcgtgctctagcttcaaatgaggcccacacaagtggacactaggattgaacc 339  Q
    ||||||||||| |||||| |||||| | |||| |||||||||| | || | |||||| |||| ||||| ||||| | |||||||||  | ||||||| ||    
T  5609339 gttcgattctctctggtgccaatttcggtgggctaagtccatacagag-cttgctctggctttaaatggggcccccgcaagtggacggtgggattgatcc 5609241  T
Q  340 cctcagattagtcaatccttgga 362  Q
    |||| |||||||| || ||||||    
T  5609240 cctcggattagtcgattcttgga 5609218  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 30738863 - 30738959
Alignment:
Q  191 taatggtgttgatttaagacttttgagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatgggttaagtccatataaag 287  Q
    ||||||||||| ||| |||||||  ||| ||||| ||| ||| ||| ||||||||||    ||| |||||||||||||||||||||| |||| ||||    
T  30738863 taatggtgttggttttagactttaaagtgtgctcatcttaagatctcgtgttcgatttcttctgatgtcaattttgatgggttaagttcatacaaag 30738959  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 34835564 - 34835631
Alignment:
Q  215 gagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatgggttaagtccata 282  Q
    |||| ||||||||| |||||||  |||||||||| | ||||||||||||| | |||| ||||||||||    
T  34835564 gagtttgctcctcttaaggtctcatgttcgattccctctggtgtcaatttcggtgggctaagtccata 34835631  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 39343534 - 39343575
Alignment:
Q  240 gttcgattctccctggtgtcaattttgatgggttaagtccata 282  Q
    ||||||||||| |||||||||||||||||||| ||||||||||    
T  39343534 gttcgattctctctggtgtcaattttgatggg-taagtccata 39343575  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 28028551 - 28028628
Alignment:
Q  194 tggtgttgatttaagacttttgagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatggg 271  Q
    ||||||||| ||  ||| |||||||  ||||||||||||||||  |||||||||||||||| || |||||| ||||||    
T  28028551 tggtgttgacttgggacctttgagtgagctcctctcaaggtctcatgttcgattctccctgatgccaatttcgatggg 28028628  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 28672102 - 28672169
Alignment:
Q  215 gagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatgggttaagtccata 282  Q
    |||| |||||||||  |||||||  ||||||||| | ||||||||||||||| |||| ||||||||||    
T  28672102 gagtttgctcctctagaggtcttaggttcgattccctctggtgtcaattttggtgggctaagtccata 28672169  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 9583406 - 9583467
Alignment:
Q  213 ttgagtatgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatgggtta 274  Q
    |||||| |||||||||||||||||   ||||||||||| |||||| |||||| | |||||||    
T  9583406 ttgagtgtgctcctctcaaggtctccagttcgattctctctggtgccaatttcggtgggtta 9583467  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 14212952 - 14212996
Alignment:
Q  240 gttcgattctccctggtgtcaattttgatgggttaagtccatata 284  Q
    ||||||||| | |||||| ||||||||||||| ||||||||||||    
T  14212952 gttcgattccctctggtgccaattttgatgggctaagtccatata 14212996  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 301
Target Start/End: Complemental strand, 8958183 - 8958113
Alignment:
Q  230 aaggtcttgtgttcgattctccctggtgtcaattttgatgggttaagtccatataaagtcgtgctctagctt 301  Q
    |||||||| |||||||||  | ||||||||||||||| |||| |||||||||| |||| | |||||||||||    
T  8958183 aaggtcttatgttcgatttcctctggtgtcaattttggtgggctaagtccatacaaag-cttgctctagctt 8958113  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 9345302 - 9345245
Alignment:
Q  207 agacttttgagtatgctcctc-tcaaggtcttgtgttcgattctccctggtgtcaatt 263  Q
    ||||||| |||| |||||||| | ||||||||  ||||||||||||||||||||||||    
T  9345302 agactttggagtgtgctcctcctaaaggtcttaggttcgattctccctggtgtcaatt 9345245  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 5608170 - 5608127
Alignment:
Q  241 ttcgattctccctggtgtcaattttgatgggttaagtccatata 284  Q
    |||||||||| ||||||||||||||| |||| ||||||||||||    
T  5608170 ttcgattctctctggtgtcaattttggtgggctaagtccatata 5608127  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 35588792 - 35588742
Alignment:
Q  220 tgctcctctcaaggtcttgtgttcgattctccctggtgtcaattttgatgg 270  Q
    ||||||||||||||||||  |||||| ||||  ||||||||||||||||||    
T  35588792 tgctcctctcaaggtcttaggttcgactctctgtggtgtcaattttgatgg 35588742  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 31669097 - 31669016
Alignment:
Q  176 ccacttgggttaatctaatggtgttgatttaagacttttgagtatgctcctctcaaggtcttgtgttcgattctccctggtg 257  Q
    |||||||||||  ||| |||||||||  ||  ||| || |||| ||||||||||||||||||  ||||||||||||| ||||    
T  31669097 ccacttgggttggtctgatggtgttggcttgggaccttggagtctgctcctctcaaggtcttaggttcgattctccccggtg 31669016  T

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