View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_68 (Length: 389)
Name: NF18404_high_68
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_68 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 374
Target Start/End: Original strand, 18207448 - 18207824
Alignment:
| Q |
4 |
aagaatatcaattacaacttttactccatcttgaaccttctaagctcaacaattttctc-------tcaaggttttcaacaattatcaaatcatcatctc |
96 |
Q |
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| T |
18207448 |
aagactatcaactacaacctttactccatcttgaaccttctaagctcaacaattttttcctcgttctcaaggttttcaacaattatcaaatcatcatctc |
18207547 |
T |
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| Q |
97 |
cgattatctcacctcgatggtgttgtgtccatagtacataagtgggaggaattagacatccgtcttttagatatacctataataaaatttatcatggttt |
196 |
Q |
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| T |
18207548 |
cgattatctcacctcaatggtgttgtgtccatagtacataagtgggaggaattagacatccgtcctttagatatacctataataaaatttatcatggttt |
18207647 |
T |
|
| Q |
197 |
cacataaacaacgataacattaattataaactaattgaaatattagaaaagaaaagtttatcataattaaatggttatccttcacatgtgcaagacacgt |
296 |
Q |
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| T |
18207648 |
cacataaacaacgataacattaattataaactaattgaaatattagaaaa-aaaaaattatcatgattaaatggttatccttcacatgtgcaagacacgt |
18207746 |
T |
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| Q |
297 |
gatttggtctctccgtgatggtgcactgcgtaaaggaaaaaatgtttcgaattgtccacttttatagatagtaaaact |
374 |
Q |
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| T |
18207747 |
gatttggtctctctgtggtggtgcaccgcgtaaaggaaaaaatgtttcgaattgcccacttttatggatagtaaaact |
18207824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 337
Target Start/End: Complemental strand, 22096556 - 22096376
Alignment:
| Q |
152 |
acatccgtcttttagatatacctataataaaatttatcatggtttcacataaacaacgataacattaattataaactaattgaaatattagaaaagaaaa |
251 |
Q |
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| T |
22096556 |
acatccgtccttcagatatacctataataaaagttatgactattacacataaacaacgataatattaaatataaactaa---aaaca--aaaagaaaaaa |
22096462 |
T |
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| Q |
252 |
gtttatcataattaaatggttatccttcacatgtgcaagacacgtgatttggtctctccgtgatggtgcactgcgtaaaggaaaaa |
337 |
Q |
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| T |
22096461 |
gtttatcaaaataaaatggttgctattcacatgtgcaagacacgtgattcggtctctttccgatggtgcaccgtgtaaagaaaaaa |
22096376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 9489137 - 9489202
Alignment:
| Q |
165 |
agatatacctataataaaatttatcatggtttcacataaacaacgataacattaattataaactaa |
230 |
Q |
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| T |
9489137 |
agatatacctataatataagttttgatggttacacataaacaacgataacattaaatataaactaa |
9489202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 35479240 - 35479334
Alignment:
| Q |
125 |
ccatagtacataagtgggaggaattagacatccgtcttttagatatacctataataaaatttatcatggtttcacataaacaacgataacattaa |
219 |
Q |
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| T |
35479240 |
ccatagtataaaagttggaggaatcagacacccatccatttgatatacatataatataatttatgacggttacacataaataatgataacattaa |
35479334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 9379781 - 9379737
Alignment:
| Q |
63 |
tcaaggttttcaacaattatcaaatcatcatctccgattatctca |
107 |
Q |
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| T |
9379781 |
tcaaggttttcaacaatcatcacaccatcatctacgattatctca |
9379737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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