View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_high_7 (Length: 762)
Name: NF18404_high_7
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 206 - 740
Target Start/End: Original strand, 51332215 - 51332744
Alignment:
| Q |
206 |
taacctgtcataaactaaaaatggtaggagagaaataagtaaaattaattgtagctacaaaattaatattcaaagctgcgttggattggaggtttaattc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51332215 |
taacctgtcataaactaaaaatggtaggagagatataagtaaaattaattgtagctacaaaattaatattcaaagctgcgttgg-----aggtttaattc |
51332309 |
T |
|
| Q |
306 |
tctaccaaagcaccgtactagatgaggtgcgtgaaatcgggtcccacgtgttgatgaatcaagtaatcatcaccgttggatggtccttcaaacataatgc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332310 |
tctaccaaagcaccgtactagatgaggtgcgtgaaatcgggtcccacgtgttgatgaatcaagtaatcatcaccgttggatggtccttcaaacataatgc |
51332409 |
T |
|
| Q |
406 |
tgtgatgatgttgtagttgcaacaattggtgttgttgggccctcatcatctccttctggcgtcggagctcttgcacctttcgatgtgagttggaatgctt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332410 |
tgtgatgatgttgtagttgcaacaattggtgttgttgggccctcatcatctccttctggcgtcggagctcttgcacctttcgatgtgagttggaatgctt |
51332509 |
T |
|
| Q |
506 |
ggtcaacacaaatgttgggcttgctgcaggcctatactcaggtacgagtcgacccgacttgtatctgactccacaggcattgcaaagtgtctttggacct |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332510 |
ggtcaacacaaatgttgggcttgctgcaggcctatactcaggtacgagtcgacccgacttgtatctgactccacaggcattgcaaagtgtctttggacct |
51332609 |
T |
|
| Q |
606 |
aatggcccagtgcgccattgtggagttttatcagtggcgcaatgaaggcacttgcgaccctcccctccatcattggggtctctctttcttggagaaggct |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332610 |
aatggcccagtgcgccattgtggagttttatcagtggcgcaatgaaggcacttgcgaccctcccctccatcattggggtctctctttcttggagaaggct |
51332709 |
T |
|
| Q |
706 |
tttttggtggagccatggtgtcagagtgagaagat |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332710 |
tttttggtggagccatggtgtcagagtgagaagat |
51332744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 51332030 - 51332172
Alignment:
| Q |
19 |
tatttcactaataagaatagaaataaaaatgaaatctataaagtcatannnnnnnggagtaatatatagcgtttttaggtgactttaat---aatatgtc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51332030 |
tatttcactaataagaatagaaataaaaatgaaatctataaagtcatatttttttggagtaatatatagcgtttttaggtgactttaataataatatgtc |
51332129 |
T |
|
| Q |
116 |
agtcaattcattgcgcaatattattcgccagtgagctcgtaag |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51332130 |
agtcaattcattgcgcaatattattcgccagtgagctcgtaag |
51332172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 486 - 589
Target Start/End: Complemental strand, 121755 - 121652
Alignment:
| Q |
486 |
cgatgtgagttggaatgcttggtcaacacaaatgttgggcttgctgcaggcctatactcaggtacgagtcgacccgacttgtatctgactccacaggcat |
585 |
Q |
| |
|
||||| |||||||| || || || | ||||||||| ||||| ||||||||||| || || || || | |||||||||||| ||||| || ||||| |||| |
|
|
| T |
121755 |
cgatgcgagttggagtgtttagtgagcacaaatgtagggctagctgcaggcctgtattcgggcaccaatcgacccgacttatatcttacaccacaagcat |
121656 |
T |
|
| Q |
586 |
tgca |
589 |
Q |
| |
|
|||| |
|
|
| T |
121655 |
tgca |
121652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University