View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_71 (Length: 386)
Name: NF18404_high_71
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_71 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 45413339 - 45412976
Alignment:
| Q |
1 |
ataaaaataaaaattaagacgtgctcatggaaaataaaattgcttagtaagcgtgaaatattacacgtgggagctatgtgttgaatggagaagaaacttt |
100 |
Q |
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| T |
45413339 |
ataaaaataaaaattaagacgtgctcatggaaa-taaaattgcttagtaagcgtgaaatattacacgtgggagctatgtgttgaatggagaagaaactta |
45413241 |
T |
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| Q |
101 |
gaatatgatgtgttaacaaaattaaattgaatttattttgtgtccccaagacaggtgctcggcatcacactgtaccattaaaaaagtgtcattagacatt |
200 |
Q |
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| T |
45413240 |
gaatatgatgtgttaacaaa-ttaaattgaatttattttgtgtccccaagacaggagctcggcatcacact--accattaaaaaagtgtcattagacatt |
45413144 |
T |
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| Q |
201 |
gttcgacaattctgatttattatgtcttgttgttgcttagtgctccctccccttcatatcaaatctcttttgctccaatactatcattatgtcttttctt |
300 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
45413143 |
gttcgacaattctgatt-attatgtctttttgttgcttagtgctccctccccttcatatcaaatctctttttctccaatactatcattatgtcttttatt |
45413045 |
T |
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| Q |
301 |
ttcttaatctctaaacaaaaacttctaacctaatttaagaatactaatctttattttttggttaggagt |
369 |
Q |
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| T |
45413044 |
ttcttaatctctaaacaaaaactgctaacctaatttaagaatactaatctttattttttggttaggagt |
45412976 |
T |
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