View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_73 (Length: 374)
Name: NF18404_high_73
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_73 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 34018229 - 34018061
Alignment:
| Q |
10 |
ataatactcctttgactcgtccggttgttccggatgagaagaggatagctgctgtgtctgattgacttgtttcaaccgggcgaagttcggtatcagtatg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34018229 |
ataatactcctttgactcgtccggttgttccggatgagaagaggatagctgctgtgtctgattgacttgtttcaacagggcgaagttcggtatcagtatc |
34018130 |
T |
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| Q |
110 |
aatggtggaattgagcacggaaagaaaagaaggagaatcaaagatgactgtgccgaggggtagtttagg |
178 |
Q |
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| T |
34018129 |
aatggtggaattgagcacggaaagaaaagaaggagaatcaaagatgactgtgccgaggggtagtttagg |
34018061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 176 - 360
Target Start/End: Complemental strand, 34016918 - 34016734
Alignment:
| Q |
176 |
aggaattgatctaatacaaagcttatcaggcgatgcattgtgaagggacaaatatttttgaagatatcattttctatatttacatttccttgcnnnnnnn |
275 |
Q |
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| T |
34016918 |
aggaattgatctaatacaaagcttatcaggcgatgcattgtgaagggacaaatatttttgaagatatcattttctatatttacatttccttgcttttttt |
34016819 |
T |
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| Q |
276 |
caggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcggtagtcccgtatgtatctactg |
360 |
Q |
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| T |
34016818 |
caggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcagtagtcccgtatgtatctactg |
34016734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 176 - 360
Target Start/End: Original strand, 34023658 - 34023845
Alignment:
| Q |
176 |
aggaattgatctaatacaaagcttatcaggcgatgcattgtgaag-ggacaaatatttttgaagatatcattttctatat--ttacatttccttgcnnnn |
272 |
Q |
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| T |
34023658 |
aggaattgatcaaatacaaagcttatcaggtgatgcattgtgaagtggacatatatttttgaagatatcatttgctatatatttacatttccttgctttt |
34023757 |
T |
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| Q |
273 |
nnncaggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcggtagtcccgtatgtatctactg |
360 |
Q |
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| T |
34023758 |
tttcaggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcagtagtcccgtatgtatctactg |
34023845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 34028029 - 34027861
Alignment:
| Q |
10 |
ataatactcctttgactcgtccggttgttccggatgagaagaggatagctgctgtgtctgattgacttgtttcaaccgggcgaagttcggtatcagtatg |
109 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||| ||||| |
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| T |
34028029 |
ataatactcctttgactcgtcccgttgttccggatgagaagaggattgctgctgtatctgattgacttgttacaaccgggcgaagttcagtatgagtatc |
34027930 |
T |
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| Q |
110 |
aatggtggaattgagcacggaaagaaaagaaggagaatcaaagatgactgtgccgaggggtagtttagg |
178 |
Q |
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| T |
34027929 |
agtggtggaattgatcacggaaagaaaagaaggagaatcagttatgacagtgcctaggggtagtttagg |
34027861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 176 - 360
Target Start/End: Original strand, 34030894 - 34031086
Alignment:
| Q |
176 |
aggaattgatctaatacaaagcttatcaggcgatgcattgtgaag-ggacaaatatttttgaagatatcattttctata-------tttacatttccttg |
267 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
34030894 |
aggaattgatcaaatacaaagcttatcaggtgatgcattgtgaagtggacagatatttttgaagataccatttgctatcgcctatctttacatttccttg |
34030993 |
T |
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| Q |
268 |
cnnnnnnncaggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcggtagtcccgtatgtatctactg |
360 |
Q |
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| T |
34030994 |
ctatttttcaggttcccccagctgaattagagcacatacttcataccaatcctgaaattgctgatgctgcagtagtcccgtatgtatctactg |
34031086 |
T |
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