View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_83 (Length: 345)
Name: NF18404_high_83
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_83 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 32169377 - 32169033
Alignment:
| Q |
1 |
tcaaagacgcctaaactccctttgttgatcacaaaactttttaaaaccttgccttgtaatacttgtttgagatttctcaaaaacctaagacaagatgcta |
100 |
Q |
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| T |
32169377 |
tcaaagacgtctaaactccctttgttgatcacaaaactttttaaaacattgccttgtaatacttgtttgagatttctcaaaaacctaagacaagatgcta |
32169278 |
T |
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| Q |
101 |
acgtggattttgtactagttttaagttggatatcttggaactccaaattcaacatgcatggtggaatttaggaattgtgaaccaaaaaataaagaagact |
200 |
Q |
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| T |
32169277 |
acgtggattttgtactagttttaagttggatatcttggaactccaaattcaacatgcatggtggaatttaggaattgtgaaccaaaaaataaagaagact |
32169178 |
T |
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| Q |
201 |
tcttttaatggttacaaatttgaatgtttgaaactctttctttgaaagtaaccatttctaatactattcatcaaacaactaaatcaagcaaatgcaactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169177 |
tcttttaatggttacaaatttgaatgtttgaaactctttctttgaaagtaacaatttctaatactattcatcaaacaactaaatcaagcaaatgcaactg |
32169078 |
T |
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| Q |
301 |
aaaacaaaacaatcgtgtaaaattggaacaaatctttactcatta |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169077 |
aaaacaaaacaatcgtgtaaaattggaacaaatctttactcatta |
32169033 |
T |
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