View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_high_86 (Length: 341)
Name: NF18404_high_86
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_86 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 2288960 - 2289161
Alignment:
| Q |
20 |
ataggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgttattctgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2288960 |
ataggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgttattctgaa |
2289059 |
T |
|
| Q |
120 |
tcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgtatgttgatatagtttctcttttctctcattttcaatat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2289060 |
tcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgtatgttgatttagtttctcttttctctcattttcaatat |
2289159 |
T |
|
| Q |
220 |
aa |
221 |
Q |
| |
|
|| |
|
|
| T |
2289160 |
aa |
2289161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 2255562 - 2255391
Alignment:
| Q |
20 |
ataggcaagcgtagtgccatggtctccccattgaaactaggtgaagaatgtaagttaggattttgttttcattctctctctcttgatatgtt--attctg |
117 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
2255562 |
atagacaagtgtagtgccatggtctccccattgaaactaggtgaagaaggtaagttaggatttggttttcattctctctcttgtgatatgttaaattctg |
2255463 |
T |
|
| Q |
118 |
aatcagtttaatttattcaaattttcctgaattctcattactgatttttgaattttgtaagtgtatgttgat |
189 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||| |
|
|
| T |
2255462 |
aatcagttaaatttattccaattttcctgaattctcattttttatttttgaattttgtatgtgtatgttgat |
2255391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University