View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_high_90 (Length: 333)

Name: NF18404_high_90
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_high_90
NF18404_high_90
[»] chr8 (5 HSPs)
chr8 (132-208)||(15004583-15004659)
chr8 (132-208)||(22354239-22354315)
chr8 (132-208)||(22342579-22342655)
chr8 (23-69)||(15004714-15004760)
chr8 (23-69)||(22342478-22342524)
[»] chr3 (4 HSPs)
chr3 (132-208)||(1672198-1672274)
chr3 (132-208)||(44270216-44270292)
chr3 (24-69)||(1668845-1668890)
chr3 (24-69)||(44273591-44273636)
[»] chr7 (3 HSPs)
chr7 (132-208)||(10461197-10461273)
chr7 (24-69)||(10461097-10461142)
chr7 (23-69)||(13071671-13071717)
[»] chr4 (2 HSPs)
chr4 (132-208)||(26071428-26071504)
chr4 (24-69)||(26074818-26074863)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 15004659 - 15004583
Alignment:
Q  132 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15004659 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 15004583  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 22354239 - 22354315
Alignment:
Q  132 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22354239 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 22354315  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 22342579 - 22342655
Alignment:
Q  132 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22342579 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaattttaatgatgacatcaaga 22342655  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 15004760 - 15004714
Alignment:
Q  23 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15004760 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 15004714  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 22342478 - 22342524
Alignment:
Q  23 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 69  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22342478 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 22342524  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 1672198 - 1672274
Alignment:
Q  132 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1672198 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 1672274  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 44270292 - 44270216
Alignment:
Q  132 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44270292 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 44270216  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 1668845 - 1668890
Alignment:
Q  24 gggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  1668845 gggttgggccgggtaaatgggtgaatgtggttttaaaaattgatat 1668890  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 44273636 - 44273591
Alignment:
Q  24 gggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  44273636 gggttgggccgggtaaatgggtgaatgtggttttaaaaattgatat 44273591  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 10461197 - 10461273
Alignment:
Q  132 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10461197 ttggtggagatggagaatataaacgatgaagtcatgactcttttgaattgtggggaatgttaatgatgacatcaaga 10461273  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 10461097 - 10461142
Alignment:
Q  24 gggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 69  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  10461097 gggttgggtcgggtaaatgggtgcatgtggttttaaaaattgatat 10461142  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 13071717 - 13071671
Alignment:
Q  23 cgggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 69  Q
    ||||||||  ||||||||||||||||||||||||||||||| |||||    
T  13071717 cgggttggaccgggtaaatgggtgaatgtggttttaaaaatcgatat 13071671  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 26071504 - 26071428
Alignment:
Q  132 ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaaga 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26071504 ttggtggagatggagaatataaacgatgaagtcaagactcttttgaattgtggggaatgttaatgatgacatcaaga 26071428  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 26074863 - 26074818
Alignment:
Q  24 gggttgggtcgggtaaatgggtgaatgtggttttaaaaattgatat 69  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  26074863 gggttgggccgggtaaatgggtgaatgtggttttaaaaattgatat 26074818  T

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