View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_93 (Length: 326)
Name: NF18404_high_93
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_93 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 24 - 316
Target Start/End: Original strand, 51294075 - 51294382
Alignment:
| Q |
24 |
ggatgtatttccattatcataaaatactcatatttttgttgcattgcatgtggcatattcactttctttcctgtaggctataaatatgcactgctattcc |
123 |
Q |
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| T |
51294075 |
ggatgtatttccattatcataaaatactcatatttttgttgcattgcatgtggcatattcactttctttcctgtaggctataaatatgcactgctattcc |
51294174 |
T |
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| Q |
124 |
aagcttgctacta---------------aaagaagatacctcacataataatataggttagcttagaggtcaagtattcttccaaaaatcatatcttata |
208 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51294175 |
aagcttgctactaccataataccaactaaaagaagatacctcacataataatataggttagcttagaggtcaagtaatcttccaaaaatcatatcttata |
51294274 |
T |
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| Q |
209 |
gtgataatatgggaggcaagaagtcctcttccttttgtggtatgttgaagtcttgtttctcaagtggaggaagcagtagggatgattattactattatga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51294275 |
gtgataatatgggaggcaagaagtcctcttccttttgtggtatgttgaagtcttgtttctcaagtggaggaagcagtagggatgattattactattatga |
51294374 |
T |
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| Q |
309 |
tgatgatg |
316 |
Q |
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|||||||| |
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| T |
51294375 |
tgatgatg |
51294382 |
T |
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