View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_94 (Length: 323)
Name: NF18404_high_94
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_94 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 3346383 - 3346694
Alignment:
| Q |
13 |
atcatcaagtcacggatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccctactatcttgtaaatttagccactacacctaacgtt |
112 |
Q |
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| T |
3346383 |
atcatcaagtcacggatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccctactatcttgtaaatttagccactacacctaacgtt |
3346482 |
T |
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| Q |
113 |
tttatttcctttctgttctgtagccacaagcaattggtctgttgtattatttacttttctaatatctcatttctcgtctttata-nnnnnnnnncaattc |
211 |
Q |
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| T |
3346483 |
tttatttcctttctgttctgtagccacaagcaattggtatattgtattatttacttttctaatatctcatttgtcgtctttatattttttttttcaattc |
3346582 |
T |
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| Q |
212 |
tttttggattaaatatgttcttcatctcaataaaatataaatcttgtacttttaattcttacttaaggcnnnnnnnaattctaacaaaattattctgcac |
311 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3346583 |
tttttggattaaatatgttcttcatttcaataaaatataaatcttgtacttttaattcttacttaaggctttttttaattctaacaaaattattctgcaa |
3346682 |
T |
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| Q |
312 |
gtagtaatagtc |
323 |
Q |
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|||||||||||| |
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| T |
3346683 |
gtagtaatagtc |
3346694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 89 - 323
Target Start/End: Original strand, 3331260 - 3331494
Alignment:
| Q |
89 |
aatttagccactacacctaacgtttttattt-cctttctgttctgtagccacaagcaattggtctgttgtattatttacttttctaatatctcatttctc |
187 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||||| | | |||||||||||| ||||| ||||||||||||||| |
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| T |
3331260 |
aatttagccactacacataacgttttttttttcctttctattctgtagccacaagcaattgatatattgtattatttatttttccaatatctcatttctc |
3331359 |
T |
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| Q |
188 |
gtctttatannnnnnnnncaattctttttggattaaatatgttcttcatctcaataaaatataaatcttgtacttttaattcttacttaaggcnnnnnnn |
287 |
Q |
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| T |
3331360 |
gtctttatatttttttttgaattctttttggattaaatatgttcttcatctcaataaaatatatatcttgtac-tttaattcttacttaaggcttttttt |
3331458 |
T |
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| Q |
288 |
aattctaacaaaattattctgcacgtagtaatagtc |
323 |
Q |
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| T |
3331459 |
atttctaacaaaatcattctgcacgtagtaatagtc |
3331494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 3330304 - 3330378
Alignment:
| Q |
13 |
atcatcaagtcacggatcctttcaaaaacaaagtagaacacattaacttcagccagacagcccctactatcttgta |
88 |
Q |
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|||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3330304 |
atcatcaactcacagatcctttcaaaa-caaagtagaacacattaacttcagccggacagcccctactatcttgta |
3330378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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