View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_97 (Length: 317)
Name: NF18404_high_97
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_97 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 40577710 - 40577412
Alignment:
| Q |
1 |
cgttaacatctgacctgggggtattgaactctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgttgcagaaagccaca |
100 |
Q |
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| T |
40577710 |
cgttaacatctgacctgggggtattgaactctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgttgcagaaagccaca |
40577611 |
T |
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| Q |
101 |
catcctgtggcgtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagttgaga |
200 |
Q |
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| T |
40577610 |
catcctgtggcgtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagttgaga |
40577511 |
T |
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| Q |
201 |
tgtgaaaatgtgtcacgttgatttcctgaaatgtttggttcacttgtgtgccattttttgaatagcaatagctggctactggccatgcaacgtgaagtt |
299 |
Q |
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| T |
40577510 |
tgtgaaaatgtgtcacgttgatttcctgaaatgtttggtttacttgtgtgccattttttgaatagcaatagctggctactggccatgcaacgtgaagtt |
40577412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 40571284 - 40570999
Alignment:
| Q |
1 |
cgttaacatctgacctgggggta-ttgaactctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgttgcagaaagccac |
99 |
Q |
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| T |
40571284 |
cgttaacatgtgaacttggggtaattgaa-tctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaac |
40571186 |
T |
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| Q |
100 |
acatcctgtggcgtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagttg-- |
197 |
Q |
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| T |
40571185 |
acatcctgtggcgtaggtttttcgcccagaatcagctgcttctaatac------tcccaccgtgtcacaaccaactgctatcaacttgtttttagttggc |
40571092 |
T |
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| Q |
198 |
-agatgtgaaaatgtgtcacgttgatttcctgaaatgtttggttcacttgtgtgccattttttgaatagcaatagctggctactggccatgca |
289 |
Q |
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| T |
40571091 |
gagatgtgaaaatgtgtcatgttgatatcctgaattatttggctcaattttgtaccattttctgaatagcaatcacttgctactggccatgca |
40570999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 40566586 - 40566307
Alignment:
| Q |
12 |
gacctgggggtattgaactctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgttgcagaaagccacacatcctgtggc |
111 |
Q |
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| T |
40566586 |
gaccttggggtattgaaatctcgcaacaaccagtacctgagcaagattgactggccataatatcatcaagcctgttgcataaagccacacatcctgtggt |
40566487 |
T |
|
| Q |
112 |
gtaggttttttcctcagaatcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagtt---gagatgtgaaaa |
208 |
Q |
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| T |
40566486 |
gtagttgtttcccccagaatca--atcgccga----gagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggcgagatgtaaaaa |
40566393 |
T |
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| Q |
209 |
tgtgtcacgttgatttcctgaaatgtttggttcacttgtgtgccattttttgaatagcaatagctggctactggccatgcaacgtg |
294 |
Q |
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| T |
40566392 |
tgtgtcatgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggctactggccatgcaacgtg |
40566307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 40589416 - 40589278
Alignment:
| Q |
164 |
tcacaaccaactgctataaacttgttttgagttg---agatgtgaaaatgtgtcacgttgatttcctgaaatgtttggttcacttgtgtgccattttttg |
260 |
Q |
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||||| |||||||||| ||||||||| |||| | ||| |||||||||||||| |||||| ||||| |||||| | | | || ||| |||||||| |
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| T |
40589416 |
tcacagccaactgctaccaacttgtttcgagtgggagagaggtgaaaatgtgtcatgttgataaactgaattgtttgttccgttcgtatgctattttttg |
40589317 |
T |
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| Q |
261 |
aatagcaatagctggctactggccatgcaacgtgaagtt |
299 |
Q |
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| T |
40589316 |
aatagcaatccttggctactggccatgcaacgtgtagtt |
40589278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 40595837 - 40595787
Alignment:
| Q |
147 |
cgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagttg |
197 |
Q |
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| T |
40595837 |
cgagtagtcccattgtgtcacatccaactgctatcaacttgttttgagttg |
40595787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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