View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_high_99 (Length: 305)
Name: NF18404_high_99
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_high_99 |
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Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 255
Target Start/End: Original strand, 22722142 - 22722374
Alignment:
| Q |
5 |
ataaaatcaatgaaggatggacgttgatcctctttccatgcatttctcatcaaacagacttcatttgtacctacaatggtcacattctcaacagttaaga |
104 |
Q |
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| T |
22722142 |
ataaaatcaatgaaagatggacgttgatcctctttccatgcatttctcatcaaacagactccatttatacctacaa-----------------gtggaga |
22722224 |
T |
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| Q |
105 |
taagaatgcattttttcaaccattaaaattttacaccatcaagtaggcgaaacaaaatgttgtccttacgcattaaaattgagtagaaaattaaaattaa |
204 |
Q |
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|||||||||||||||| ||||| ||||||||||||| || ||||||| ||| |||||||| | |||| |||||||||||||||||||||||||||| | |
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| T |
22722225 |
taagaatgcatttttttaaccaataaaattttacacaataaagtaggataaataaaatgtttta-ttactcattaaaattgagtagaaaattaaaattta |
22722323 |
T |
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| Q |
205 |
aacagcatatctaagaagctaatggattaagagaaagatagaagcataatt |
255 |
Q |
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|||| |||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
22722324 |
aacaaaatatctaagaagctaacggattaagagaaggatagaagcataatt |
22722374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 23747516 - 23747415
Alignment:
| Q |
185 |
gagtagaaaattaaaattaaaacagcatatctaagaagctaatggattaagagaaagatagaagcataattgagcttatttgagcttatctagtgactta |
284 |
Q |
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| T |
23747516 |
gagtagaaaattaaaattaaaacagcatatctaagaagctaatggattaagagaaagatagaagcataattgagcttatttgagcttatctagtgactta |
23747417 |
T |
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| Q |
285 |
ag |
286 |
Q |
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|| |
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| T |
23747416 |
ag |
23747415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 2356208 - 2356288
Alignment:
| Q |
1 |
ggagataaaatcaatgaaggatggacgttgatcctctttccatgcatttctcatcaaacagacttcatttgtacctacaat |
81 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |
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| T |
2356208 |
ggagataaaatcaatgaaggaaggatgttgatcctctttccatgcatttctcatcaaacagattccatttgtatctacaat |
2356288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23747560 - 23747522
Alignment:
| Q |
1 |
ggagataaaatcaatgaaggatggacgttgatcctcttt |
39 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
23747560 |
ggagataaaatcaatgaaggatggacgttgatcctcttt |
23747522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 18538939 - 18538883
Alignment:
| Q |
183 |
ttgagtagaaaattaaaattaaaacagcatatctaagaagctaatggattaagagaa |
239 |
Q |
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||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
18538939 |
ttgagtagaaatgtaaaattcaaacaacatatctaagaagctaatggattaagagaa |
18538883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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