View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_1 (Length: 2292)

Name: NF18404_low_1
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_1
NF18404_low_1
[»] chr7 (38 HSPs)
chr7 (150-644)||(2290203-2290697)
chr7 (1709-2276)||(2292231-2292796)
chr7 (148-644)||(2252839-2253335)
chr7 (705-975)||(2291593-2291867)
chr7 (1229-1389)||(15578053-15578213)
chr7 (1226-1389)||(38916045-38916208)
chr7 (971-1138)||(2291966-2292135)
chr7 (1234-1389)||(28750587-28750742)
chr7 (1205-1389)||(27230768-27230957)
chr7 (1534-1709)||(28750891-28751066)
chr7 (1534-1710)||(38916353-38916532)
chr7 (1962-2177)||(2250533-2250747)
chr7 (1536-1673)||(27230474-27230609)
chr7 (1539-1709)||(15577445-15577611)
chr7 (1536-1677)||(32741753-32741895)
chr7 (1207-1331)||(32741450-32741579)
chr7 (1709-1895)||(2250765-2250952)
chr7 (1569-1709)||(31166960-31167100)
chr7 (774-833)||(2252458-2252517)
chr7 (1135-1206)||(2292168-2292239)
chr7 (985-1099)||(2252286-2252410)
chr7 (1235-1338)||(41539443-41539546)
chr7 (1225-1320)||(28750947-28751042)
chr7 (666-706)||(2290719-2290759)
chr7 (913-957)||(2252409-2252453)
chr7 (1611-1667)||(27595999-27596055)
chr7 (1590-1677)||(21972091-21972177)
chr7 (1244-1295)||(32741833-32741884)
chr7 (33-71)||(2290084-2290122)
chr7 (1226-1320)||(38916413-38916507)
chr7 (1569-1673)||(21971546-21971649)
chr7 (1226-1338)||(21972073-21972184)
chr7 (1255-1310)||(38478433-38478488)
chr7 (1614-1677)||(38916052-38916115)
chr7 (1257-1324)||(41342281-41342348)
chr7 (666-700)||(2252783-2252817)
chr7 (1254-1320)||(27230491-27230557)
chr7 (1282-1324)||(34567692-34567734)
[»] chr6 (17 HSPs)
chr6 (1225-1389)||(12306970-12307134)
chr6 (1230-1389)||(605275-605434)
chr6 (1225-1385)||(8701197-8701357)
chr6 (1235-1371)||(7727047-7727183)
chr6 (1540-1710)||(8700863-8701034)
chr6 (1534-1677)||(604985-605132)
chr6 (1536-1657)||(7727347-7727469)
chr6 (1564-1710)||(12307296-12307431)
chr6 (1614-1700)||(12306955-12307041)
chr6 (1335-1389)||(5365388-5365442)
chr6 (1614-1702)||(8701286-8701374)
chr6 (1279-1338)||(4296660-4296719)
chr6 (1335-1389)||(2481239-2481293)
chr6 (1232-1295)||(604984-605047)
chr6 (1279-1338)||(28113978-28114037)
chr6 (1617-1702)||(2484209-2484293)
chr6 (1614-1675)||(7727047-7727108)
[»] chr1 (12 HSPs)
chr1 (1231-1389)||(40889075-40889233)
chr1 (1536-1712)||(40888757-40888934)
chr1 (1206-1338)||(23269922-23270059)
chr1 (1232-1293)||(25182407-25182468)
chr1 (1279-1324)||(3565115-3565160)
chr1 (1617-1702)||(23269929-23270014)
chr1 (1335-1389)||(44681144-44681198)
chr1 (1617-1677)||(25182407-25182467)
chr1 (1279-1322)||(3564628-3564671)
chr1 (1335-1389)||(23272386-23272439)
chr1 (1279-1324)||(29441590-29441635)
chr1 (1680-1721)||(30657595-30657636)
[»] chr4 (26 HSPs)
chr4 (1206-1389)||(43013060-43013248)
chr4 (1207-1389)||(23643711-23643894)
chr4 (1230-1389)||(54714520-54714685)
chr4 (1534-1708)||(43012731-43012906)
chr4 (1536-1710)||(54714839-54715014)
chr4 (1534-1657)||(23643430-23643556)
chr4 (1569-1677)||(12639727-12639835)
chr4 (1569-1702)||(28103781-28103914)
chr4 (1569-1677)||(38147399-38147507)
chr4 (1225-1320)||(43012754-43012849)
chr4 (1614-1702)||(43013153-43013241)
chr4 (1590-1657)||(12639207-12639274)
chr4 (1591-1677)||(917684-917770)
chr4 (1335-1389)||(12632824-12632878)
chr4 (1225-1319)||(12639749-12639843)
chr4 (1335-1389)||(27108531-27108585)
chr4 (1254-1338)||(20644704-20644787)
chr4 (1254-1338)||(12639208-12639292)
chr4 (1617-1712)||(12629808-12629902)
chr4 (1225-1324)||(12629834-12629933)
chr4 (1590-1653)||(28104359-28104421)
chr4 (1254-1324)||(53297784-53297854)
chr4 (1617-1702)||(27105531-27105615)
chr4 (1680-1713)||(29591184-29591217)
chr4 (1226-1319)||(38147392-38147485)
chr4 (1614-1675)||(54714525-54714586)
[»] chr5 (16 HSPs)
chr5 (1207-1389)||(14394274-14394460)
chr5 (1232-1389)||(25672560-25672717)
chr5 (1207-1389)||(20983772-20983959)
chr5 (1534-1707)||(14393953-14394127)
chr5 (1539-1708)||(25672242-25672411)
chr5 (1570-1709)||(20983519-20983658)
chr5 (1569-1721)||(39121840-39121992)
chr5 (1225-1320)||(20983543-20983638)
chr5 (1614-1702)||(20983865-20983953)
chr5 (1251-1310)||(8107590-8107649)
chr5 (1614-1689)||(14394367-14394442)
chr5 (1614-1677)||(25672653-25672716)
chr5 (1252-1323)||(27129241-27129312)
chr5 (1252-1322)||(7741941-7742011)
chr5 (1225-1319)||(39121862-39121956)
chr5 (1233-1318)||(14393983-14394068)
[»] chr8 (13 HSPs)
chr8 (1208-1389)||(186977-187162)
chr8 (1497-1710)||(186649-186861)
chr8 (1231-1389)||(308604-308762)
chr8 (1243-1389)||(25276812-25276957)
chr8 (1536-1712)||(308277-308454)
chr8 (1534-1637)||(25277105-25277209)
chr8 (1569-1705)||(146615-146751)
chr8 (1569-1677)||(26759211-26759319)
chr8 (1225-1320)||(308304-308399)
chr8 (1253-1323)||(3967005-3967075)
chr8 (1255-1338)||(14200171-14200254)
chr8 (1251-1310)||(16063629-16063688)
chr8 (1281-1338)||(3988694-3988751)
[»] chr2 (19 HSPs)
chr2 (1192-1389)||(9914507-9914707)
chr2 (1225-1389)||(9074899-9075063)
chr2 (1229-1389)||(30674094-30674254)
chr2 (1534-1709)||(9074574-9074749)
chr2 (1536-1678)||(9914199-9914342)
chr2 (1545-1685)||(30674406-30674545)
chr2 (1569-1719)||(39865304-39865454)
chr2 (1569-1677)||(4329606-4329714)
chr2 (1569-1708)||(29770743-29770882)
chr2 (1590-1677)||(4330135-4330221)
chr2 (1279-1338)||(8373215-8373274)
chr2 (1226-1320)||(9074598-9074692)
chr2 (1253-1323)||(19037639-19037709)
chr2 (1253-1323)||(32479876-32479946)
chr2 (1279-1335)||(25571696-25571752)
chr2 (1614-1693)||(9074992-9075071)
chr2 (1279-1338)||(19037231-19037290)
chr2 (1251-1310)||(26556636-26556695)
chr2 (1659-1702)||(28277517-28277560)
[»] chr3 (12 HSPs)
chr3 (1230-1389)||(53153501-53153660)
chr3 (1230-1389)||(785426-785585)
chr3 (1254-1389)||(30384736-30384871)
chr3 (1534-1705)||(785734-785906)
chr3 (1536-1657)||(30385719-30385837)
chr3 (1534-1655)||(53153819-53153941)
chr3 (1569-1706)||(23566895-23567032)
chr3 (1279-1338)||(18715208-18715267)
chr3 (1568-1677)||(39737729-39737838)
chr3 (1614-1666)||(53153515-53153567)
chr3 (1203-1273)||(23566409-23566477)
chr3 (1305-1338)||(39737279-39737312)


Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 150 - 644
Target Start/End: Original strand, 2290203 - 2290697
Alignment:
Q  150 acctacaatggagaagccttgactgatgcgcacgaagaatcacgatttgtgcgcactggcgacggtggtggttgcgatagcattttgcgattgtgggagt 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2290203 acctacaatggagaagccttgactgatgcgcacgaagaatcacgatttgtgcgcactggcgacggtggtggttgcgatagcattttgcaattgcgggagt 2290302  T
Q  250 cgctcgaggtgggttttaggcggtggtgatagggtttgctgattttcttcattctcatttattcttcctatatggtttcttataatctctctcaaaaaac 349  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2290303 cgctcgaggtgggttttaggcggtggtaatagggtttgctgattttcttcattctcatttattcttcctatatggtttcttataatctctcttaaaaaac 2290402  T
Q  350 tatgtatttctgtattgtgatgtgtgatgtagttttagactgaaaattgaagaccttagctttctaaaatattttccccctctcttttgctctagtttat 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2290403 tatgtatttctgtattgtgatgtgtgatgtagttttagactgaaaattgaagaccttagctttctaaaatattttccccttctcttttgctctagtttat 2290502  T
Q  450 tgctcatatttatactcctaagttaggttaaagtatgagtgaagatgccaaaacttagagtaaggagcaagacaaattgtagtactattttgttgctcct 549  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2290503 tgctcatatttatactcctaagttaggttaaagtgtgagtgaagatgccaaaacttagagtaaggagcaagagaaattgtagtactattttgttgctcct 2290602  T
Q  550 tgtgcatggctgttggggatgatgccaaaatggtaagtctggagttggaagaaaatgcagagatgcatgtggtctatgtatgtcttgagagcacc 644  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2290603 tgtgcatggctgttggggatgatgccaaaatggtaaggctggagttggaagaaaatgcagagatgcatgtggtctatgtatgtcttgagagcacc 2290697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1709 - 2276
Target Start/End: Original strand, 2292231 - 2292796
Alignment:
Q  1709 ttttattattatttctgatatttttactaaaaatagtgagacttttaagccttttgtaagaggtccacaaatagaattttgttgagaagcccatattata 1808  Q
    ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2292231 ttttattattaatttttatatttttactaaaaatagtgagacttttaagccttttgtaagaggtccacaaatagaattttgttgagaagcccatattata 2292330  T
Q  1809 tgaactccgatcatttcataaaaga-taagatattaattttccagtgaatgtgacataaatcaaagagtgcaactagcaaattaaagatgtacttcaatg 1907  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||    ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  2292331 tgaactccgatcatttcataaaaaaataagatattaattttccagtg----tgacataaatcaaagagtgcaactagcaatttaaagatgtaattcaatg 2292426  T
Q  1908 caagtccaacgaagtcaatgctagcaactatagatgaaaattgttatttagatacctatgattgctcacaagtccctcaaaatttcgaaaatatcttcaa 2007  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  2292427 caagtccaacgaagtcaatgctagcaactatagatgaaaattgttatttaggtacctatgattgctcacaattccctcaaaattacgaaaataccttcaa 2292526  T
Q  2008 cggtagttaaatatagttcgttgttgaacaagaattacaagtcattccaaagttatcatatatttgtcaaacctcaannnnnnnacccttatctatcgtc 2107  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||| |||||||||| |    
T  2292527 cagtagttaaatatagttcgttgttgaacaagaattacaagtcattccaaagttatcatatatttgacaaacctcagttttgttacctttatctatcgcc 2292626  T
Q  2108 accctactaccctataatttcacccattcatccaaaatttcaaaacttttttccaaaacgtgtgtc-aaatcagcacatatggactgctaaggggtttta 2206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2292627 accctactaccctataatttcacccattcatccaaaatttcaaaacttttttccaaaacgtgtgtcaaaatcagcacatatggactgctaaggggtttta 2292726  T
Q  2207 cacccatttaaccttgagaaacagcataatgatattcaataacgtatcaaaaaagtagattagaaaatga 2276  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  2292727 cacccatttaaccttaagaaacagcataataatattcaataacgtatcgaaaaagtagattagaaaatga 2292796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 148 - 644
Target Start/End: Complemental strand, 2253335 - 2252839
Alignment:
Q  148 gtacctacaatggagaagccttgactgatgcgcacgaagaatcacgatttgtgcgcactggcgacggtggtggttgcgatagcattttgcgattgtggga 247  Q
    ||||| |||||||||||||||     ||||| ||||||| |||| |||||||||||||||| || | |||||||||| |||||| ||| | ||||  |||    
T  2253335 gtaccaacaatggagaagcct----agatgcacacgaagtatcatgatttgtgcgcactggtgatgctggtggttgccatagcagttttctattgcagga 2253240  T
Q  248 gtcgctcgaggtgggttttaggcggtggtgatagggtttgctgattttcttcattctcatttattcttcctatatggtttcttataatctctctcaaaa- 346  Q
    |||||||||||||||||| | ||||||||||||||| ||| ||||||| |||||||||||||| ||||||||||| ||||||||| |||||||| ||||     
T  2253239 gtcgctcgaggtgggtttcaagcggtggtgataggggttgttgatttttttcattctcatttactcttcctatattgtttcttatcatctctctaaaaaa 2253140  T
Q  347 --aactatgtatttctgtattgtgatgtgtgatgtagttttagactgaaaattgaagaccttagctttctaaaatattttccccctctcttttgctctag 444  Q
      |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  2253139 ataactatgtatttttgtattgtgatgtgtgatgtagttttagactgaaaattgaagactttagctttcaaaaatattttccccttctcttttgctctag 2253040  T
Q  445 tttattgctcatatttatactcctaagttaggttaaagtatgagtgaagatgccaaaacttagagtaaggagcaagacaaattgtagtactattttgttg 544  Q
    |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  2253039 tttattgctcgtatttatactcctaagttaggttaaggtgtgagtgaagatgccaaaacttagagtgaggagcaagagaaattgtagtactattttgttg 2252940  T
Q  545 ctccttgtgcatggctgttggggatgatgccaaaatggtaagtctggagttggaagaaaatgcagagatgcatgtggtctatgt-atgtcttgagagcac 643  Q
    ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  2252939 ctccttgtgcatggccgttggggatggtgccaaaatggtaaggctggagttggaagaaaatgcagagatccatgtggtctatgtaatgtcttgggagcac 2252840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 705 - 975
Target Start/End: Original strand, 2291593 - 2291867
Alignment:
Q  705 gatcagtagaacctacacaaaaaatttgtcaaaaacttctgaaaatgcaacagctaaaagagaagaattaattaattagcctccttgagggcctttgaaa 804  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  2291593 gatcagtagaacctacacaaaaaatttgtcaaaaaattctgaaaatgcaacagctgaaagagaagaattaattaattagccttcttgagggcctttgaaa 2291692  T
Q  805 gagaagagttaaataatgaaaaattatgtcactaagttatttctatttcaa----tannnnnnnncatttgtgtatatatgcacgcatatttttcatttg 900  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |         |||| ||||||||||||||||||||||||||||||    
T  2291693 gagaagagttaaataatgaaaaattatgtcactaagttatttctatttcaattttttttttctttcattagtgtatatatgcacgcatatttttcatttg 2291792  T
Q  901 gggttatgaccaaataagattttctcctttatagaaatgacatgttaataattcatgggaagaggaatactagca 975  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  2291793 gggttatgaccaaataagatttcttcctatatagaaatgacatgttaataattcatgggaagaggaatgctagca 2291867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 145; E-Value: 2e-75
Query Start/End: Original strand, 1229 - 1389
Target Start/End: Complemental strand, 15578213 - 15578053
Alignment:
Q  1229 cactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatata 1328  Q
    |||||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15578213 cactggataataaataataaataggtaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatata 15578114  T
Q  1329 gttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15578113 gttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 15578053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 144; E-Value: 8e-75
Query Start/End: Original strand, 1226 - 1389
Target Start/End: Original strand, 38916045 - 38916208
Alignment:
Q  1226 gggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagat 1325  Q
    |||||||||||||||||||||||||| |||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38916045 gggcactggataagaaataataaataggcaataaataaatagatctcaattggtttatctaaattaaagtgagatataagtcaactaattaaaataagat 38916144  T
Q  1326 atagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38916145 atagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 38916208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 139; E-Value: 7e-72
Query Start/End: Original strand, 971 - 1138
Target Start/End: Original strand, 2291966 - 2292135
Alignment:
Q  971 tagcataactctcgtgagaaagcataaatatcaaaacttaattccttcaaggaaaa--aagttcaaaaatgatttccacaacaaggtcatttatgtattc 1068  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||||| || |||||||    
T  2291966 tagcataactctcgtgagaaagcataaatatcaaaacttaattgcttcaaggaaaaaaaagttcaaaaatgatttcgacaacaaggtcaattgtgtattc 2292065  T
Q  1069 acctttaaaaaaggttcaaatgtgaacatttactgcttttaagaagtcaattagttcattaaaattgaca 1138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2292066 acctttaaaaaaggttcaaatgtgaacatttactgcttttaagaagtcaattagtccattaaaattgaca 2292135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 136; E-Value: 5e-70
Query Start/End: Original strand, 1234 - 1389
Target Start/End: Original strand, 28750587 - 28750742
Alignment:
Q  1234 gataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgt 1333  Q
    ||||| |||||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28750587 gataaaaaataataaataggcaataaataaatgaatttcaattggtttatctaaattaaagtgagatataagtcaactaattaaaataagatatagttgt 28750686  T
Q  1334 atttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28750687 atttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 28750742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 130; E-Value: 2e-66
Query Start/End: Original strand, 1205 - 1389
Target Start/End: Complemental strand, 27230957 - 27230768
Alignment:
Q  1205 atgggtgctgctaaccagtg-----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgaga 1299  Q
    ||||||||||||||||||||     |||||||| ||||| |||||| ||||| ||||||| ||||||||||| ||||  |||||||||||||||||||||    
T  27230957 atgggtgctgctaaccagtgccctgggggcactagataaaaaataaaaaataggcaataagtaaatgaatctcaattattttacctaaattaaagtgaga 27230858  T
Q  1300 tataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27230857 tataagtcaactaattaaaataagatataattgtatttattgtttgtttttgtagcactaacatcaacaattatgttatttatcatctac 27230768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 105; E-Value: 1e-51
Query Start/End: Original strand, 1534 - 1709
Target Start/End: Original strand, 28750891 - 28751066
Alignment:
Q  1534 aaaagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaat 1632  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||     
T  28750891 aaaagattgaatatggtattgatgatggcagagagatattgaatata-catttattaattttaattagttgaaatattttacactttaattaaggtaaac 28750989  T
Q  1633 caagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccct 1709  Q
     |||||| |||||||||||||||| ||||||||||||||||||||  |||||| ||| |||| ||||||||||||||    
T  28750990 taagtgagatccatttatttattgcctatttattgttccttatccagtgcccctgggacaccggttagcattgccct 28751066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 96; E-Value: 3e-46
Query Start/End: Original strand, 1534 - 1710
Target Start/End: Original strand, 38916353 - 38916532
Alignment:
Q  1534 aaaagattgattatggtattgatgatggtg----agagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagata 1629  Q
    |||||||||| |||||||||||| ||| ||    ||||||||| |||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||    
T  38916353 aaaagattgaatatggtattgatcatgatggcagagagatattaaatataacatttattaattttaattagttgaaatattttacactttaattaaggta 38916452  T
Q  1630 aatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccctt 1710  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||  || ||| | |||||| |||||||||||||||    
T  38916453 aatcaagtgagatccatttatttattgtctatttattgttctttatccagtg-cccagaggcaccggttagcattgccctt 38916532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 95; E-Value: 1e-45
Query Start/End: Original strand, 1962 - 2177
Target Start/End: Complemental strand, 2250747 - 2250533
Alignment:
Q  1962 cctatgattgctcacaagtccctcaaaatttcgaaaatatcttcaacggtagttaaatatagttcgttgttgaacaagaattacaagtcattccaaagtt 2061  Q
    |||| ||||||||||| |||||||||||||   |||| | || ||||||||||||||||||||||| || ||||||||| ||||||| | ||| | ||||    
T  2250747 cctaggattgctcacatgtccctcaaaattcaaaaaacacct-caacggtagttaaatatagttcgctgctgaacaagagttacaagcccttctagagtt 2250649  T
Q  2062 atcatatatttgtcaaacctcaannnnnnnacccttatctatcgtcaccctactaccctataatttcacccattcatccaaaatttcaaaacttttttcc 2161  Q
    ||| ||||||||  |||| ||||       |||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  2250648 atcgtatatttgaaaaacttcaattttgttacccttatctatcggcacactactacactatattttcacccattcatccaaaatttcaaaacttttttcc 2250549  T
Q  2162 aaaacgtgtgtcaaat 2177  Q
    |||| |||||||||||    
T  2250548 aaaatgtgtgtcaaat 2250533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 3e-43
Query Start/End: Original strand, 1536 - 1673
Target Start/End: Complemental strand, 27230609 - 27230474
Alignment:
Q  1536 aagattgattatggtattgatgatggtgagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaa 1635  Q
    |||| ||| |||||||||||||||||  |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  27230609 aagagtgaatatggtattgatgatgg--agagatattgaatatagcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaa 27230512  T
Q  1636 gtgacatccatttatttattgtctatttattgttcctt 1673  Q
     ||| || ||||||||||||||||||| ||||||||||    
T  27230511 atgagattcatttatttattgtctattaattgttcctt 27230474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 1e-36
Query Start/End: Original strand, 1539 - 1709
Target Start/End: Complemental strand, 15577611 - 15577445
Alignment:
Q  1539 attgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagt 1637  Q
    ||||| |||||||||||||||||  |||| || ||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||  ||||    
T  15577611 attgaatatggtattgatgatggcagagatattttgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaactaagt 15577512  T
Q  1638 gacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccct 1709  Q
    || ||||||||     ||||||||||||||||||||||||  ||||||  ||||||| ||||||||||||||    
T  15577511 gagatccattt-----ttgtctatttattgttccttatccagtgcccctagggcaccggttagcattgccct 15577445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 79; E-Value: 5e-36
Query Start/End: Original strand, 1536 - 1677
Target Start/End: Original strand, 32741753 - 32741895
Alignment:
Q  1536 aagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatca 1634  Q
    |||||||| |||| |||||||||||   ||||||||||||||||||||||||| |||||| | |||||||||||||||| |||||||||||| |||| ||    
T  32741753 aagattgaatatgctattgatgatgacagagagatattgaatatagcatttattaattttaaatagttgaaatattttatactttaattaaggtaaacca 32741852  T
Q  1635 agtgacatccatttatttattgtctatttattgttccttatcc 1677  Q
    ||||| ||||||||||||||||  |||||||||||| ||||||    
T  32741853 agtgagatccatttatttattgcttatttattgttcattatcc 32741895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 78; E-Value: 2e-35
Query Start/End: Original strand, 1207 - 1331
Target Start/End: Original strand, 32741450 - 32741579
Alignment:
Q  1207 gggtgctgctaaccagtg-----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagata 1301  Q
    ||||||||||||||||||     |||||| | |||||||||||||||||| ||||||||||||||||||| ||||| |||| |||||||| |||||||||    
T  32741450 gggtgctgctaaccagtgtttttggggcattagataagaaataataaatatgcaataaataaatgaatctcaattgatttatctaaattatagtgagata 32741549  T
Q  1302 taagtcaactaattaaaataagatatagtt 1331  Q
    ||||||||||||||||| ||||||||||||    
T  32741550 taagtcaactaattaaattaagatatagtt 32741579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 72; E-Value: 7e-32
Query Start/End: Original strand, 1709 - 1895
Target Start/End: Complemental strand, 2250952 - 2250765
Alignment:
Q  1709 ttttattattatttctgatatttttactaaaaatagtgagacttttaagccttttgtaagaggtccacaaatagaattttgttgagaagcccatattata 1808  Q
    ||||||||||| |||| ||||||| |||||| ||||||||| ||||||||||||| |||||| |||||||||  |||||||||| || |||||||||| |    
T  2250952 ttttattattaattctcatattttaactaaacatagtgagaattttaagccttttttaagagctccacaaatcaaattttgttgggaggcccatattaga 2250853  T
Q  1809 tgaactccgatcatttcataaaagataagatattaattt-tccagtgaatgtgacataaatcaaagagtgcaactagcaaattaaaga 1895  Q
    |||||||  |||||||| |||||   || | ||||||||  | | |||| |||||||||||||||||||| |||||| || |||||||    
T  2250852 tgaactcatatcatttcttaaaaataaacagattaatttgactaatgaaagtgacataaatcaaagagtgaaactagaaatttaaaga 2250765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 1569 - 1709
Target Start/End: Original strand, 31166960 - 31167100
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||| ||||| | |||| ||||||||| |||| ||| ||||||||| |||| ||| |||||| || |||||||||| |  |||||||||||    
T  31166960 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgt 31167059  T
Q  1669 tccttatccgatgccccgggggcaccagttagcattgccct 1709  Q
    |||||||||  ||||||||||||||  ||||||||||||||    
T  31167060 tccttatccagtgccccgggggcactggttagcattgccct 31167100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 774 - 833
Target Start/End: Complemental strand, 2252517 - 2252458
Alignment:
Q  774 aattaattagcctccttgagggcctttgaaagagaagagttaaataatgaaaaattatgt 833  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2252517 aattaattagcctccttgagggcctttgaaagagaagagttaaataatgaaaaattatgt 2252458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 1e-24
Query Start/End: Original strand, 1135 - 1206
Target Start/End: Original strand, 2292168 - 2292239
Alignment:
Q  1135 gacacaataaagattttaagtcaaaatcatcaaatcaatccaaataagttctttcttttctatttttattat 1206  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2292168 gacacaataaagatttaaaatcaaaatcatcaaatcaatccaaataagttatttcttttctatttttattat 2292239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 985 - 1099
Target Start/End: Complemental strand, 2252410 - 2252286
Alignment:
Q  985 tgagaaagcataaatatcaaaacttaattccttcaaggaaaaa-agttcaaaaatgatttccacaacaaggtcatttatg---------tattcaccttt 1074  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||| ||||| |||| ||         |||||||| ||    
T  2252410 tgagaaagcataaatatcaaaacttaattccttcaaggaaaaatagttcaaaaattatatccacaagaaggttatttgtgtgcatttaatattcaccatt 2252311  T
Q  1075 aaaaaaggttcaaatgtgaacattt 1099  Q
    ||||||||||||||| |||||||||    
T  2252310 aaaaaaggttcaaatctgaacattt 2252286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 1235 - 1338
Target Start/End: Original strand, 41539443 - 41539546
Alignment:
Q  1235 ataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgta 1334  Q
    |||||||| |||||||| ||||||||||||||||||||| ||||||||  | |||||||||  |  |||||| ||||||||||||||| | |||| ||||    
T  41539443 ataagaaacaataaataggcaataaataaatgaatcttagttggtttattttaattaaagtaggtaataagtgaactaattaaaataaaaaatagctgta 41539542  T
Q  1335 ttta 1338  Q
    ||||    
T  41539543 ttta 41539546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 0.000000000000004
Query Start/End: Original strand, 1225 - 1320
Target Start/End: Complemental strand, 28751042 - 28750947
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaat 1320  Q
    ||||||||||||||| || |||||||| |||||||||||||| |||| | || |||||||| ||||||||||  | |||  |||||||||||||||    
T  28751042 ggggcactggataaggaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaat 28750947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 666 - 706
Target Start/End: Original strand, 2290719 - 2290759
Alignment:
Q  666 gcaaatgagaaagcattaattggatgatgcttgaaaacgga 706  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2290719 gcaaatgagaaagcattaattggatgatgcttgaaaacgga 2290759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000006
Query Start/End: Original strand, 913 - 957
Target Start/End: Complemental strand, 2252453 - 2252409
Alignment:
Q  913 aataagattttctcctttatagaaatgacatgttaataattcatg 957  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||    
T  2252453 aataagatttgctcctttatagaattgacatgttaataattcatg 2252409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000006
Query Start/End: Original strand, 1611 - 1667
Target Start/End: Complemental strand, 27596055 - 27595999
Alignment:
Q  1611 ttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattg 1667  Q
    ||||||||||||| |||| ||| |||||| |||||||||||||||| ||||||||||    
T  27596055 ttacactttaattgagatgaattaagtgagatccatttatttattggctatttattg 27595999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1590 - 1677
Target Start/End: Original strand, 21972091 - 21972177
Alignment:
Q  1590 attttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatcc 1677  Q
    ||||| ||||||||| |||||||||| |||||||||||| ||| |||||| || |||||||||| ||  | || ||||||||||||||    
T  21972091 attttaattagttgacatattttaca-tttaattaagatgaattaagtgagattcatttatttaatgcattttaattgttccttatcc 21972177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1244 - 1295
Target Start/End: Complemental strand, 32741884 - 32741833
Alignment:
Q  1244 aataaataagcaataaataaatgaatcttaattggtttacctaaattaaagt 1295  Q
    ||||||||||||||||||||||| |||| | ||||||||||| |||||||||    
T  32741884 aataaataagcaataaataaatggatctcacttggtttaccttaattaaagt 32741833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 2290084 - 2290122
Alignment:
Q  33 caatgagtaaatcagaaagtataagtttttagtctagtt 71  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2290084 caatgagtaaatcagaaagtataattttttagtctagtt 2290122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1226 - 1320
Target Start/End: Complemental strand, 38916507 - 38916413
Alignment:
Q  1226 gggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaat 1320  Q
    |||||||||||||  || ||||||||  ||||||||||||| |||| | ||| ||||||| ||||||||||  | |||  |||||||||||||||    
T  38916507 gggcactggataaagaacaataaatagacaataaataaatggatctcacttgatttaccttaattaaagtgtaaaatatttcaactaattaaaat 38916413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1569 - 1673
Target Start/End: Complemental strand, 21971649 - 21971546
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||| ||||| | |||| ||||||||| |||| ||| ||||||||| |||| | | |||||| || |||||||||| |   ||||||||||    
T  21971649 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgagttaagtgagat-catttatttaattattatttattgt 21971551  T
Q  1669 tcctt 1673  Q
    |||||    
T  21971550 tcctt 21971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1226 - 1338
Target Start/End: Complemental strand, 21972184 - 21972073
Alignment:
Q  1226 gggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagat 1325  Q
    |||||||||||||| || ||| || | ||| ||||||||||||||| | ||  || | || ||||||| ||  | ||| ||||||||||||||||||||     
T  21972184 gggcactggataaggaacaattaaaatgcattaaataaatgaatctcacttaattcatcttaattaaa-tgtaaaatatgtcaactaattaaaataagaa 21972086  T
Q  1326 atagttgtattta 1338  Q
    |||||||||||||    
T  21972085 atagttgtattta 21972073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1255 - 1310
Target Start/End: Complemental strand, 38478488 - 38478433
Alignment:
Q  1255 aataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaac 1310  Q
    ||||||||||||||||| ||||| ||||||| ||||||  ||||| ||||||||||    
T  38478488 aataaataaatgaatctcaattgatttacctcaattaatttgagaaataagtcaac 38478433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1614 - 1677
Target Start/End: Complemental strand, 38916115 - 38916052
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatcc 1677  Q
    |||||||||| ||||||| ||| ||| ||| |||||||||||| ||||||||| || |||||||    
T  38916115 cactttaatttagataaaccaattgagatctatttatttattgcctatttattatttcttatcc 38916052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1257 - 1324
Target Start/End: Original strand, 41342281 - 41342348
Alignment:
Q  1257 taaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    ||||| ||| ||||| | ||| |||||||  |||||||||||| |||| |||||||||||||||||||    
T  41342281 taaatgaatcaatctcatttgttttacctctattaaagtgagaaataaatcaactaattaaaataaga 41342348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 666 - 700
Target Start/End: Complemental strand, 2252817 - 2252783
Alignment:
Q  666 gcaaatgagaaagcattaattggatgatgcttgaa 700  Q
    ||||||| |||||||||||||||||||||||||||    
T  2252817 gcaaatgggaaagcattaattggatgatgcttgaa 2252783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1254 - 1320
Target Start/End: Original strand, 27230491 - 27230557
Alignment:
Q  1254 caataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaat 1320  Q
    |||||||||||||||||| | ||| ||||||| ||||||||||  | |||  |||||||||||||||    
T  27230491 caataaataaatgaatctcatttgatttaccttaattaaagtgtaaaatatttcaactaattaaaat 27230557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1282 - 1324
Target Start/End: Complemental strand, 34567734 - 34567692
Alignment:
Q  1282 acctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    |||| ||||||||||| | ||||||||||||||||||||||||    
T  34567734 accttaattaaagtgataaataagtcaactaattaaaataaga 34567692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 3e-80; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-80
Query Start/End: Original strand, 1225 - 1389
Target Start/End: Original strand, 12306970 - 12307134
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12306970 ggggcactggataagaaataataaatagacaataaataaatgaatcttaattgatttacctaaattaaagtgagatataagtcaactaattaaaataaga 12307069  T
Q  1325 tatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12307070 tatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 12307134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 8e-75
Query Start/End: Original strand, 1230 - 1389
Target Start/End: Complemental strand, 605434 - 605275
Alignment:
Q  1230 actggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatag 1329  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  605434 actggataagaaataataaataggcaataaataaatgaatctcaattggtttacctaaattaaattgagatataaatcaactaattaaaataagatatag 605335  T
Q  1330 ttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  605334 ttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 605275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-70
Query Start/End: Original strand, 1225 - 1385
Target Start/End: Complemental strand, 8701357 - 8701197
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  8701357 ggggcactggttaagaaataataaataggcaataaataaatgaatctcaattgatttacttaaattaaagtgatatataagtcaactaattaaaataaga 8701258  T
Q  1325 tatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcat 1385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8701257 tatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcat 8701197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 109; E-Value: 6e-54
Query Start/End: Original strand, 1235 - 1371
Target Start/End: Original strand, 7727047 - 7727183
Alignment:
Q  1235 ataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgta 1334  Q
    ||||||||||||||||| | |||||||||||| |||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  7727047 ataagaaataataaataggtaataaataaatggatctcaattgatttacctaaattaaagtgcgatataaatcaactaattaaaataagatatagttgta 7727146  T
Q  1335 tttattgtttgtttttgtagcactaacatcatcaatt 1371  Q
    |||||||||||||||||||||||||||||||||||||    
T  7727147 tttattgtttgtttttgtagcactaacatcatcaatt 7727183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 6e-51
Query Start/End: Original strand, 1540 - 1710
Target Start/End: Complemental strand, 8701034 - 8700863
Alignment:
Q  1540 ttgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtg 1638  Q
    |||| ||||||||||||||||   ||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  8701034 ttgaatatggtattgatgatgacagagagatattgaatataacatttattaattttaattagttaaaatattttacactttaattaaggtaaatcaagtg 8700935  T
Q  1639 acatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccctt 1710  Q
    | |||||| ||||||||| ||||||||||||||||||||| |||| |||| ||||| |||||||||||||||    
T  8700934 agatccatctatttattgcctatttattgttccttatccggtgcctcgggagcaccggttagcattgccctt 8700863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-45
Query Start/End: Original strand, 1534 - 1677
Target Start/End: Complemental strand, 605132 - 604985
Alignment:
Q  1534 aaaagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgatta---gttgaaatattttacactttaattaagata 1629  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||   |||||||||||||| |||||||||||| ||    
T  605132 aaaagattgaatatggtattgatgatggtagagagatattgaatataacatttattaattttaattattagttgaaatattttatactttaattaaggta 605033  T
Q  1630 aatcaagtgacatccatttatttattgtctatttattgttccttatcc 1677  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  605032 aatcaagtgagatccatttatttattgcctatttattgttccttatcc 604985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-36
Query Start/End: Original strand, 1536 - 1657
Target Start/End: Original strand, 7727347 - 7727469
Alignment:
Q  1536 aagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatca 1634  Q
    |||||||| |||||||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||    
T  7727347 aagattgaatatggtattgatgatggcagagagatattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaacca 7727446  T
Q  1635 agtgacatccatttatttattgt 1657  Q
    ||||| ||| |||||||||||||    
T  7727447 agtgagatcaatttatttattgt 7727469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 7e-35
Query Start/End: Original strand, 1564 - 1710
Target Start/End: Original strand, 12307296 - 12307431
Alignment:
Q  1564 agagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctattt 1663  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||           |||||    
T  12307296 agagatattgaatataacatttattaattttaattagttgaaatattttacactttaattaagataaatcaagtgagatctatt-----------tattt 12307384  T
Q  1664 attgttccttatccgatgccccgggggcaccagttagcattgccctt 1710  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||||    
T  12307385 attgttccttatccaatggcccgggggcaccggttagcattgccctt 12307431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1614 - 1700
Target Start/End: Complemental strand, 12307041 - 12306955
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttag 1700  Q
    |||||||||| || |||||||| | | || ||||||||||||||||||||||| || |||||||  ||||||||||||||| |||||    
T  12307041 cactttaatttaggtaaatcaattaagattcatttatttattgtctatttattatttcttatccagtgccccgggggcaccggttag 12306955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000004
Query Start/End: Original strand, 1335 - 1389
Target Start/End: Original strand, 5365388 - 5365442
Alignment:
Q  1335 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||| ||||||||||||| || ||| |||||||||||||||||||||    
T  5365388 tttattgtttgtctttgtagcactaatattatccattatgttatttatcatctac 5365442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000006
Query Start/End: Original strand, 1614 - 1702
Target Start/End: Original strand, 8701286 - 8701374
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagca 1702  Q
    |||||||||| |  |||||||| ||| || ||||||||||||| ||||||||| || |||| ||  ||||||||||||||| |||||||    
T  8701286 cactttaatttaagtaaatcaattgagattcatttatttattgcctatttattatttcttaaccagtgccccgggggcaccggttagca 8701374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1279 - 1338
Target Start/End: Original strand, 4296660 - 4296719
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||||| ||||||||||| | |||||||||||||||||||||| | | |||||||||||    
T  4296660 tttaccttaattaaagtgataaataagtcaactaattaaaataaaagagagttgtattta 4296719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1335 - 1389
Target Start/End: Complemental strand, 2481293 - 2481239
Alignment:
Q  1335 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||| ||||||||||||| |  ||| |||||||||||||||||||||    
T  2481293 tttattgtttgtctttgtagcactaatactatccattatgttatttatcatctac 2481239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1232 - 1295
Target Start/End: Original strand, 604984 - 605047
Alignment:
Q  1232 tggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagt 1295  Q
    |||||||| || |||||||| |||||||||||||| |||| | ||| ||||||| |||||||||    
T  604984 tggataaggaacaataaataggcaataaataaatggatctcacttgatttaccttaattaaagt 605047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1279 - 1338
Target Start/End: Complemental strand, 28114037 - 28113978
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||||| ||||||||||| | ||||||||| |||||||||||| | | |||||||||||    
T  28114037 tttaccttaattaaagtgataaataagtcaattaattaaaataaaagagagttgtattta 28113978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1617 - 1702
Target Start/End: Original strand, 2484209 - 2484293
Alignment:
Q  1617 tttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagca 1702  Q
    ||||||| || ||||||| || | ||| ||| |||||| ||||||||| ||||||||||||  ||||||||||||||  |||||||    
T  2484209 tttaattgaggtaaatcatgtaagatctattcatttat-gtctatttaatgttccttatccagtgccccgggggcactggttagca 2484293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1614 - 1675
Target Start/End: Complemental strand, 7727108 - 7727047
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttat 1675  Q
    |||||||||| || |||||||| ||| |||||||||||||||  ||||||||| || |||||    
T  7727108 cactttaatttaggtaaatcaattgagatccatttatttattacctatttattatttcttat 7727047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 5e-79; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-79
Query Start/End: Original strand, 1231 - 1389
Target Start/End: Complemental strand, 40889233 - 40889075
Alignment:
Q  1231 ctggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagt 1330  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40889233 ctggataagaaataataaataggcaataaataaatgaatcttaattgttttacctaaattaaagtgagatataagtcaactaattaaaataagatatagt 40889134  T
Q  1331 tgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40889133 tgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 40889075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-54
Query Start/End: Original strand, 1536 - 1712
Target Start/End: Complemental strand, 40888934 - 40888757
Alignment:
Q  1536 aagattgattatggtattgatgatggtg-agagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatca 1634  Q
    |||| ||| ||||||||||||||||||  |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  40888934 aagagtgaatatggtattgatgatggtatagagatattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataaatca 40888835  T
Q  1635 agtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccctttt 1712  Q
    ||| | |||||||||| ||||| ||||| |||||| |||||||||||| |||| |||||| |||||||||||| ||||    
T  40888834 agttagatccatttatgtattgcctattaattgtttcttatccgatgctccggaggcaccggttagcattgccttttt 40888757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1206 - 1338
Target Start/End: Original strand, 23269922 - 23270059
Alignment:
Q  1206 tgggtgctgctaaccagtg-----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagat 1300  Q
    |||||||||||||||||||     ||||||||||||||| || | ||||||  |||||||| |||  |||||| ||| ||||||| ||||||| |  ||     
T  23269922 tgggtgctgctaaccagtgccctcggggcactggataaggaacattaaatagacaataaatgaatagatcttacttgatttacctcaattaaaataggaa 23270021  T
Q  1301 ataagtcaactaattaaaataagatatagttgtattta 1338  Q
    |||| ||||||||||||||||||| |||||| ||||||    
T  23270022 ataaatcaactaattaaaataagaaatagttatattta 23270059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-16
Query Start/End: Original strand, 1232 - 1293
Target Start/End: Complemental strand, 25182468 - 25182407
Alignment:
Q  1232 tggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaa 1293  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||| |||||||||||||||    
T  25182468 tggataagaaataataaatagacaataaataaatgaatctcaattgatttacctaaattaaa 25182407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1279 - 1324
Target Start/End: Complemental strand, 3565160 - 3565115
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  3565160 tttacctcaattaaagtgagaaataagtcaactaattaaaataaga 3565115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 1617 - 1702
Target Start/End: Complemental strand, 23270014 - 23269929
Alignment:
Q  1617 tttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagca 1702  Q
    ||||||| || |||||||||| | ||| ||| |||||||||||||||| ||||||||||||  ||||||| ||||||  |||||||    
T  23270014 tttaattgaggtaaatcaagtaagatctattcatttattgtctatttaatgttccttatccagtgccccgagggcactggttagca 23269929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1335 - 1389
Target Start/End: Original strand, 44681144 - 44681198
Alignment:
Q  1335 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||| ||||||||||||| |  ||| |||||||||||||||||||||    
T  44681144 tttattgtttgtctttgtagcactaatactatccattatgttatttatcatctac 44681198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1617 - 1677
Target Start/End: Original strand, 25182407 - 25182467
Alignment:
Q  1617 tttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatcc 1677  Q
    ||||||| || |||||||| ||| || ||||||||||||||||||||||| || |||||||    
T  25182407 tttaatttaggtaaatcaattgagattcatttatttattgtctatttattatttcttatcc 25182467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1279 - 1322
Target Start/End: Original strand, 3564628 - 3564671
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataa 1322  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||    
T  3564628 tttacctcaattaaagtgagaaataagtcaactaactaaaataa 3564671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1335 - 1389
Target Start/End: Original strand, 23272386 - 23272439
Alignment:
Q  1335 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||| || ||||||||||||| || |||| ||||||||||||||||||||    
T  23272386 tttattgttggtctttgtagcactaatattatca-ttatgttatttatcatctac 23272439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1279 - 1324
Target Start/End: Complemental strand, 29441635 - 29441590
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    ||||||| ||||||| ||| | ||||||||||||||||||||||||    
T  29441635 tttaccttaattaaaatgataaataagtcaactaattaaaataaga 29441590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1680 - 1721
Target Start/End: Complemental strand, 30657636 - 30657595
Alignment:
Q  1680 tgccccgggggcaccagttagcattgcccttttattattatt 1721  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||    
T  30657636 tgccccgggagcaccggttagcatttcccttttattattatt 30657595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-75; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-75
Query Start/End: Original strand, 1206 - 1389
Target Start/End: Complemental strand, 43013248 - 43013060
Alignment:
Q  1206 tgggtgctgctaaccagtg-----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagat 1300  Q
    |||||||||||||||||||     ||||||||||||||||||||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||    
T  43013248 tgggtgctgctaaccagtgcccccggggcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagat 43013149  T
Q  1301 ataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43013148 ataagtcaactaattaaaatgagatatagttgtatttattgtttgtttttgtagcattaacatcatcaattatgttatttatcatctac 43013060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-67
Query Start/End: Original strand, 1207 - 1389
Target Start/End: Complemental strand, 23643894 - 23643711
Alignment:
Q  1207 gggtgctgctaaccagtg-----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagata 1301  Q
    ||||||||||||||||||     |||||| ||||||||||||||||||||||||||||||    |||| | ||||| |||||||||||||||||||||||    
T  23643894 gggtgctgctaaccagtgccctgggggcaatggataagaaataataaataagcaataaat----gaatttcaattgatttacctaaattaaagtgagata 23643799  T
Q  1302 taagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23643798 taagtcaactaattaaaataagatatagttgtatttattgtttgttttcgtagcactaacatcatcaattatgttatttatcatctac 23643711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-64
Query Start/End: Original strand, 1230 - 1389
Target Start/End: Original strand, 54714520 - 54714685
Alignment:
Q  1230 actggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatag 1329  Q
    |||| |||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54714520 actgtataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatag 54714619  T
Q  1330 ttgtatttattgtttgtttttgtagcactaacatca------tcaattatgttatttatcatctac 1389  Q
    ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||    
T  54714620 ttgtatttattgtttgtttttgtagcactaacatcatcaatttcaattatgttatttatcatctac 54714685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-60
Query Start/End: Original strand, 1534 - 1708
Target Start/End: Complemental strand, 43012906 - 43012731
Alignment:
Q  1534 aaaagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaat 1632  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||     
T  43012906 aaaagattgaatatggtattgatgatggcagagagatattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaac 43012807  T
Q  1633 caagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccc 1708  Q
    ||| ||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||    
T  43012806 caaatgagatccatttatttattgtctatttattgttccttatccagtgccccgggggcaccggttagcattgccc 43012731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-55
Query Start/End: Original strand, 1536 - 1710
Target Start/End: Original strand, 54714839 - 54715014
Alignment:
Q  1536 aagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatca 1634  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||| |||||| |||| || |||||||||||||||||||||||||||||||    
T  54714839 aagattgattatggtattgatgatggcagagagatattgaatataacatttattaattttaattatttaaaatattttacactttaattaagataaatca 54714938  T
Q  1635 agtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccctt 1710  Q
    ||||| |||||||||||||||| |||||| || ||| |||||| ||||||||| |||||| |||||||||||||||    
T  54714939 agtgaaatccatttatttattgcctattttttattctttatccaatgccccggaggcaccggttagcattgccctt 54715014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-39
Query Start/End: Original strand, 1534 - 1657
Target Start/End: Complemental strand, 23643556 - 23643430
Alignment:
Q  1534 aaaagattgattatggtattgatgatggt---gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataa 1630  Q
    ||||||||||||||| ||||||||||||    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  23643556 aaaagattgattatgttattgatgatggcagagagagatattgaatatagcatttattaattttaattagttgaaatattttacactttaattaagataa 23643457  T
Q  1631 atcaagtgacatccatttatttattgt 1657  Q
    || |||||| ||| |||||||||||||    
T  23643456 atgaagtgagatcaatttatttattgt 23643430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 1569 - 1677
Target Start/End: Original strand, 12639727 - 12639835
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||| ||||| | |||| ||||||||| |||||||||||||||||| || | ||| |||||| |||||||||||||||| |||||||||||    
T  12639727 tattgaatatagcttttattatttttaattagttgacatattttacactttaattgaggtgaattaagtgagatccatttatttattgcctatttattgt 12639826  T
Q  1669 tccttatcc 1677  Q
    |||||||||    
T  12639827 tccttatcc 12639835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-26
Query Start/End: Original strand, 1569 - 1702
Target Start/End: Complemental strand, 28103914 - 28103781
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||| ||||| | |||| ||||||||| |||| ||||||| ||||| |||| ||| |||||| ||||||||||||| ||  ||||||||||    
T  28103914 tattgaatatagcttttattatttttaattagttgacatatattacactctaattgagatgaattaagtgagatccatttatttaatgattatttattgt 28103815  T
Q  1669 tccttatccgatgccccgggggcaccagttagca 1702  Q
    |||||||||  | ||||||||||||| |||||||    
T  28103814 tccttatcccgtaccccgggggcaccggttagca 28103781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-25
Query Start/End: Original strand, 1569 - 1677
Target Start/End: Complemental strand, 38147507 - 38147399
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||| ||||| | |||| ||||||||| |||| ||||||||||||| |||| ||| |||||| |||||||||||||||| ||||||| |||    
T  38147507 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattgactatttactgt 38147408  T
Q  1669 tccttatcc 1677  Q
    |||||||||    
T  38147407 tccttatcc 38147399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000004
Query Start/End: Original strand, 1225 - 1320
Target Start/End: Original strand, 43012754 - 43012849
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaat 1320  Q
    ||||||||||||||| || ||||||||  ||||||||||||| |||| | ||||||||||| ||||||||||  | |||  |||||||||||||||    
T  43012754 ggggcactggataaggaacaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaat 43012849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1614 - 1702
Target Start/End: Original strand, 43013153 - 43013241
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagca 1702  Q
    |||||||||| || |||| ||| ||| |||||||||||||||| ||||||||| || |||||||  ||||||||||||||  |||||||    
T  43013153 cactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgccccgggggcactggttagca 43013241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000009
Query Start/End: Original strand, 1590 - 1657
Target Start/End: Complemental strand, 12639274 - 12639207
Alignment:
Q  1590 attttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgt 1657  Q
    ||||| ||||||||| ||||||||||| |||||| || ||||| |||||| |||||||||||||||||    
T  12639274 attttaattagttgacatattttacacattaattgaggtaaattaagtgagatccatttatttattgt 12639207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000004
Query Start/End: Original strand, 1591 - 1677
Target Start/End: Complemental strand, 917770 - 917684
Alignment:
Q  1591 ttttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatcc 1677  Q
    |||| ||||||||| |||| ||||||||||||| |||| ||| || | | || ||||||||||||| ||||||||||||| ||||||    
T  917770 ttttaattagttgacatatattacactttaattgagatgaattaacttagattcatttatttattgactatttattgttctttatcc 917684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000004
Query Start/End: Original strand, 1335 - 1389
Target Start/End: Original strand, 12632824 - 12632878
Alignment:
Q  1335 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||| ||||||||||||| || ||| |||||||||||||||||||||    
T  12632824 tttattgtttgtctttgtagcactaatattatccattatgttatttatcatctac 12632878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1225 - 1319
Target Start/End: Complemental strand, 12639843 - 12639749
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 1319  Q
    |||| |||||||||| || |||||||| |||||||||||||| |||| | ||  || |||| ||||||||||  | ||| |||||||||||||||    
T  12639843 ggggtactggataaggaacaataaataggcaataaataaatggatctcacttaattcacctcaattaaagtgtaaaatatgtcaactaattaaaa 12639749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1335 - 1389
Target Start/End: Original strand, 27108531 - 27108585
Alignment:
Q  1335 tttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||| ||||||||||||| |  ||| |||||||||||||||||||||    
T  27108531 tttattgtttgtctttgtagcactaatactatccattatgttatttatcatctac 27108585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1254 - 1338
Target Start/End: Original strand, 20644704 - 20644787
Alignment:
Q  1254 caataaataaatgaatcttaa-ttggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||||||||||||| ||||| ||||||||||| ||||||| ||| | |||| |||| |||||||||||| | |||||||||||||    
T  20644704 caataaataaatgaa-cttaatttggtttacctcaattaaaatgaaaaataaatcaattaattaaaataa-aaatagttgtattta 20644787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1254 - 1338
Target Start/End: Original strand, 12639208 - 12639292
Alignment:
Q  1254 caataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||||||||||| |||| | ||  ||||||| |||||| |||  | ||| |||||||||||||||||| | |||||||||||||    
T  12639208 caataaataaatggatctcacttaatttacctcaattaatgtgtaaaatatgtcaactaattaaaataaaaaatagttgtattta 12639292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1617 - 1712
Target Start/End: Complemental strand, 12629902 - 12629808
Alignment:
Q  1617 tttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccctttt 1712  Q
    ||||||| || ||||||| || | ||| ||| |||||||||||||||| ||||||||||||  ||||||  ||||||| ||||||| | |||||||    
T  12629902 tttaattgaggtaaatcatgtaagatctattcatttattgtctatttaatgttccttatccagtgcccc-agggcaccggttagcagtaccctttt 12629808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1225 - 1324
Target Start/End: Original strand, 12629834 - 12629933
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    ||||||||||||||| || | ||||||  |||||||| |||  ||||||  || ||||||| ||||||| |  || |||| |||||||||||||||||||    
T  12629834 ggggcactggataaggaacattaaatagacaataaatgaatagatcttacatgatttacctcaattaaaataggaaataaatcaactaattaaaataaga 12629933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1590 - 1653
Target Start/End: Original strand, 28104359 - 28104421
Alignment:
Q  1590 attttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttattta 1653  Q
    ||||| ||||||||| |||||||||| ||||||| |||| ||| |||||| |||||||||||||    
T  28104359 attttaattagttgatatattttaca-tttaattgagatgaattaagtgagatccatttattta 28104421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1254 - 1324
Target Start/End: Original strand, 53297784 - 53297854
Alignment:
Q  1254 caataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    |||||||||||||| ||| | ||  ||||||| ||||||||||| | |||| |||| ||||||||||||||    
T  53297784 caataaataaatgattctcacttaatttaccttaattaaagtgataaataaatcaattaattaaaataaga 53297854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1617 - 1702
Target Start/End: Complemental strand, 27105615 - 27105531
Alignment:
Q  1617 tttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagca 1702  Q
    ||||||| || ||||||| || | ||| ||| |||||| ||||||||| ||||||||||||  ||||||||||||||  |||||||    
T  27105615 tttaattgaggtaaatcatgtaagatctattcatttat-gtctatttaatgttccttatccagtgccccgggggcactggttagca 27105531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1680 - 1713
Target Start/End: Complemental strand, 29591217 - 29591184
Alignment:
Q  1680 tgccccgggggcaccagttagcattgccctttta 1713  Q
    ||||||||||||||||||||||||| ||||||||    
T  29591217 tgccccgggggcaccagttagcatttccctttta 29591184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1226 - 1319
Target Start/End: Original strand, 38147392 - 38147485
Alignment:
Q  1226 gggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 1319  Q
    |||||||||||||| || | ||||||  ||||||||||||| |||| | ||  || | || ||||||||||  ||||| |||||||||||||||    
T  38147392 gggcactggataaggaacagtaaatagtcaataaataaatggatctcacttaattcatctcaattaaagtgtaatatatgtcaactaattaaaa 38147485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1614 - 1675
Target Start/End: Complemental strand, 54714586 - 54714525
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttat 1675  Q
    |||||||||| || |||| ||| ||| || ||||||||||||||||||||||| || |||||    
T  54714586 cactttaatttaggtaaaccaattgagattcatttatttattgtctatttattatttcttat 54714525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 142; Significance: 1e-73; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-73
Query Start/End: Original strand, 1207 - 1389
Target Start/End: Complemental strand, 14394460 - 14394274
Alignment:
Q  1207 gggtgctgctaaccagtg----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatat 1302  Q
    ||||||||||||||||||    ||||||||| |||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14394460 gggtgctgctaaccagtgccccggggcactgaataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgagatat 14394361  T
Q  1303 aagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  14394360 aagtcaactaattaaaataagatataattgtatttattatttgtttttgtaacactaacatcatcaattatgttatttatcatctac 14394274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-71
Query Start/End: Original strand, 1232 - 1389
Target Start/End: Complemental strand, 25672717 - 25672560
Alignment:
Q  1232 tggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagtt 1331  Q
    ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25672717 tggataagaaataataaatagacaataaataaatgaatctcaattggtttacctaaattaaagtgatatataagtcaactaattaaaataagatatagtt 25672618  T
Q  1332 gtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25672617 gtatttattgtttgtttttgtagcacaaacatcatcaattatgttatttatcatctac 25672560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-70
Query Start/End: Original strand, 1207 - 1389
Target Start/End: Complemental strand, 20983959 - 20983772
Alignment:
Q  1207 gggtgctgctaaccagtg-----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagata 1301  Q
    ||||||||||||||||||     || |||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||    
T  20983959 gggtgctgctaaccagtgcccccggagcactggataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagata 20983860  T
Q  1302 taagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  20983859 taagtcaactaattaaaatgagatatagttgtatttattgtttgtttttgtagtattaacatcatcaattatgttatttatcatctac 20983772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-57
Query Start/End: Original strand, 1534 - 1707
Target Start/End: Complemental strand, 14394127 - 14393953
Alignment:
Q  1534 aaaagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaat 1632  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||    
T  14394127 aaaagattgattatggtattgatgatggcagagagatattgaatatagcatttattaaatttaattagttgaaatattttacattttaattaagataaat 14394028  T
Q  1633 caagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgcc 1707  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||||||| ||  | ||||| ||||||||||||    
T  14394027 caagtgagatccatttatttattgcttatttattgttccttatccgatgctcccagagcaccggttagcattgcc 14393953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-55
Query Start/End: Original strand, 1539 - 1708
Target Start/End: Complemental strand, 25672411 - 25672242
Alignment:
Q  1539 attgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagt 1637  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  25672411 attgattatggtattgatgatggcagagagatattaaatatagcatttattaattttaattagttgaaatattttacactttaattaatataaaccaagt 25672312  T
Q  1638 gacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccc 1708  Q
    || ||||||||||||||||  |||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  25672311 gagatccatttatttattgcatattcattgttccttatccgatgcccc-ggggcaccggttagcattgccc 25672242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-41
Query Start/End: Original strand, 1570 - 1709
Target Start/End: Complemental strand, 20983658 - 20983519
Alignment:
Q  1570 attgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgtt 1669  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||||||||| ||    
T  20983658 attgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaaccaaatgagatccatttatttattgtctatttattttt 20983559  T
Q  1670 ccttatccgatgccccgggggcaccagttagcattgccct 1709  Q
     |||||||  ||||||||||||||| ||||||||| ||||    
T  20983558 tcttatccagtgccccgggggcaccggttagcattaccct 20983519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-27
Query Start/End: Original strand, 1569 - 1721
Target Start/End: Original strand, 39121840 - 39121992
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||| | ||||| | |||| ||||||||| |||| ||| ||||||||| |||||||| |||||| || |||||||||| |  |||||||||||    
T  39121840 tattgaatataacttttattatttttaattagttgacatatattatactttaattgagataaattaagtgagattcatttatttaattactatttattgt 39121939  T
Q  1669 tccttatccgatgccccgggggcaccagttagcattgcccttttattattatt 1721  Q
    |||||||||  |||||||| | |||| |||||||||||||| || ||||||||    
T  39121940 tccttatccagtgccccggagacaccggttagcattgccctatttttattatt 39121992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 1225 - 1320
Target Start/End: Original strand, 20983543 - 20983638
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaat 1320  Q
    |||||||||||||||||| ||||||||  ||||||||||||| |||| | ||||||||||| ||||||||||  | |||  |||||||||||||||    
T  20983543 ggggcactggataagaaaaaataaatagacaataaataaatggatctcatttggtttaccttaattaaagtgtaaaatatttcaactaattaaaat 20983638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000006
Query Start/End: Original strand, 1614 - 1702
Target Start/End: Original strand, 20983865 - 20983953
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagca 1702  Q
    |||||||||| || |||| ||| ||| |||||||||||||||| ||||||||| || |||||||  ||| ||||||||||  |||||||    
T  20983865 cactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatccagtgctccgggggcactggttagca 20983953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1251 - 1310
Target Start/End: Original strand, 8107590 - 8107649
Alignment:
Q  1251 aagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaac 1310  Q
    |||||||||||| |||||||| ||||| ||||||| ||||||  ||||| ||||||||||    
T  8107590 aagcaataaatagatgaatctcaattgatttacctcaattaatttgagaaataagtcaac 8107649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1614 - 1689
Target Start/End: Original strand, 14394367 - 14394442
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggg 1689  Q
    |||||||||| || |||| ||| ||| || ||||||||||||||||||||||| || ||||| |  ||||||||||    
T  14394367 cactttaatttaggtaaaccaattgagattcatttatttattgtctatttattatttcttattcagtgccccgggg 14394442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1614 - 1677
Target Start/End: Original strand, 25672653 - 25672716
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatcc 1677  Q
    |||||||||| || |||| ||| ||| || ||||||||||||||||||||||| || |||||||    
T  25672653 cactttaatttaggtaaaccaattgagattcatttatttattgtctatttattatttcttatcc 25672716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1252 - 1323
Target Start/End: Complemental strand, 27129312 - 27129241
Alignment:
Q  1252 agcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataag 1323  Q
    |||||||||| ||| ||||  | ||| |||||||  |||||||||||| |||| ||||||||||||||||||    
T  27129312 agcaataaatgaatcaatcccacttgttttacctctattaaagtgagaaataaatcaactaattaaaataag 27129241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1252 - 1322
Target Start/End: Complemental strand, 7742011 - 7741941
Alignment:
Q  1252 agcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataa 1322  Q
    |||||||||| ||| ||||  | ||| |||||||  |||||||||||| |||| |||||||||||||||||    
T  7742011 agcaataaatgaatcaatcccacttgttttacctctattaaagtgagaaataaatcaactaattaaaataa 7741941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1225 - 1319
Target Start/End: Complemental strand, 39121956 - 39121862
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaa 1319  Q
    ||||||||||||||| || ||||||||   | ||||||||||||||| | ||  |||| || |||||||||   ||||| |||||||||||||||    
T  39121956 ggggcactggataaggaacaataaatagtaattaaataaatgaatctcacttaatttatctcaattaaagtataatatatgtcaactaattaaaa 39121862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1233 - 1318
Target Start/End: Original strand, 14393983 - 14394068
Alignment:
Q  1233 ggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaa 1318  Q
    ||||||| || ||||||||||||||||||||||| |||| | ||| |||| || ||||||| ||  | |||  |||||||||||||    
T  14393983 ggataaggaacaataaataagcaataaataaatggatctcacttgatttatcttaattaaaatgtaaaatatttcaactaattaaa 14394068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 7e-72; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-72
Query Start/End: Original strand, 1208 - 1389
Target Start/End: Complemental strand, 187162 - 186977
Alignment:
Q  1208 ggtgctgctaaccagtg-----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatat 1302  Q
    |||||||||||||||||     ||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  187162 ggtgctgctaaccagtgccccgggggcactggataagaaataataaataggcaataaataaatgaatctcaattagtttacctaaattaaagtgagatat 187063  T
Q  1303 aagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  187062 aagtcaactaatt-atataagatataattgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 186977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-67
Query Start/End: Original strand, 1497 - 1710
Target Start/End: Complemental strand, 186861 - 186649
Alignment:
Q  1497 gattgaatattttattttttagaagatnnnnnnnnngaaaagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttg 1595  Q
    |||||||||||||||||||||||||||          ||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| ||||||     
T  186861 gattgaatattttattttttagaagataaaaaaaa--aaaagattgattatggtattgatgatggcagagagatattgaatataacatttattaatttta 186764  T
Q  1596 attagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcacca 1695  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||| ||||||||||||     
T  186763 attagttgaaatattttacaatttaattaagataaatcaagtgagatccatttatttattagctatttattgttccttatccgatgtcccgggggcaccg 186664  T
Q  1696 gttagcattgccctt 1710  Q
    |||||||||||||||    
T  186663 gttagcattgccctt 186649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 6e-60
Query Start/End: Original strand, 1231 - 1389
Target Start/End: Complemental strand, 308762 - 308604
Alignment:
Q  1231 ctggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagt 1330  Q
    |||||||| |||||||||||| |||||| |||||| ||||| ||||||||||  ||||||||| |||||||||| |||||||||||||||||||||||||    
T  308762 ctggataaaaaataataaataggcaatatataaataaatctcaattggtttatttaaattaaaatgagatataaatcaactaattaaaataagatatagt 308663  T
Q  1331 tgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  308662 tatatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 308604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-57
Query Start/End: Original strand, 1243 - 1389
Target Start/End: Original strand, 25276812 - 25276957
Alignment:
Q  1243 taataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtatttattgt 1342  Q
    ||||||||| ||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  25276812 taataaataggcaataaataaatgaatatcaattggtttatctaaattaaagtgagatataagtcaagtaattaaaataaaatatagttgtatttattgt 25276911  T
Q  1343 ttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  25276912 ttgttttt-tagcactaacatcatcaattatgttatttatcatctac 25276957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 9e-50
Query Start/End: Original strand, 1536 - 1712
Target Start/End: Complemental strand, 308454 - 308277
Alignment:
Q  1536 aagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatca 1634  Q
    |||| ||| ||| |||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||  |    
T  308454 aagactgaatatagtattgatgatggcagagagatattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaacta 308355  T
Q  1635 agtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccctttt 1712  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||| |||||| |||||||| |||||||||| ||||||    
T  308354 agtgagatccatttatttattgcctatttattgttcattatccggtgcccctggggcaccggttagcattgtcctttt 308277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-25
Query Start/End: Original strand, 1534 - 1637
Target Start/End: Original strand, 25277105 - 25277209
Alignment:
Q  1534 aaaagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaat 1632  Q
    |||||||||| ||||||||||||||| |  || |||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||||| |||||    
T  25277105 aaaagattgaatatggtattgatgattgaagaaagatattgaatatagcatttattaattttaattagttaaaatatttcacactttaattaaggtaaat 25277204  T
Q  1633 caagt 1637  Q
    |||||    
T  25277205 caagt 25277209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-23
Query Start/End: Original strand, 1569 - 1705
Target Start/End: Complemental strand, 146751 - 146615
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||  ||||| |||||| ||||||||| |||| ||||||||||||| |||| ||| |||||| ||||||||||||| || |||||||||||    
T  146751 tattgaatatagtttttattaattttaattagttgacatatattacactttaattgagattaataaagtgagatccatttatttaatggctatttattgt 146652  T
Q  1669 tccttatccgatgccccgggggcaccagttagcattg 1705  Q
    || |||||   || ||||| ||||||  |||||||||    
T  146651 tcattatcttgtgtcccggaggcaccgattagcattg 146615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-16
Query Start/End: Original strand, 1569 - 1677
Target Start/End: Complemental strand, 26759319 - 26759211
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    |||| |||||||| ||||| | |||| ||||||||  |||| ||| ||||||||| |||| ||| |||||| ||||||||||||| |  |||||||||||    
T  26759319 tatttaatatagcttttattatttttaattagttggcatatattatactttaattgagatgaattaagtgagatccatttatttaattactatttattgt 26759220  T
Q  1669 tccttatcc 1677  Q
    |||||||||    
T  26759219 tccttatcc 26759211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1225 - 1320
Target Start/End: Original strand, 308304 - 308399
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaat 1320  Q
    ||||||| ||||||  || |||||||| |||||||||||||| |||| | || |||||||| ||||||||||  | |||  |||||||||||||||    
T  308304 ggggcaccggataatgaacaataaataggcaataaataaatggatctcacttagtttaccttaattaaagtgtaaaatatttcaactaattaaaat 308399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1253 - 1323
Target Start/End: Original strand, 3967005 - 3967075
Alignment:
Q  1253 gcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataag 1323  Q
    ||||||||| ||| ||||| | ||| |||||||  |||||||||||| |||| ||||||||||||||||||    
T  3967005 gcaataaatgaatcaatctcacttgttttacctctattaaagtgagaaataaatcaactaattaaaataag 3967075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1255 - 1338
Target Start/End: Complemental strand, 14200254 - 14200171
Alignment:
Q  1255 aataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||||| |||  |||||| ||| ||||||| ||||||| |  || |||| ||||||||||||||||||| |||||| ||||||    
T  14200254 aataaatgaatagatcttacttgatttacctcaattaaaataggaaataaatcaactaattaaaataagaaatagttatattta 14200171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1251 - 1310
Target Start/End: Complemental strand, 16063688 - 16063629
Alignment:
Q  1251 aagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaac 1310  Q
    |||||||||||| |||||||| ||||| ||||||| ||||||  ||||| ||||||||||    
T  16063688 aagcaataaatagatgaatctcaattgatttacctcaattaatttgagaaataagtcaac 16063629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1281 - 1338
Target Start/End: Complemental strand, 3988751 - 3988694
Alignment:
Q  1281 tacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||| ||||||||||| | ||||||||| |||||||||||| | | |||||||||||    
T  3988751 taccttaattaaagtgataaataagtcaattaattaaaataaaagagagttgtattta 3988694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 7e-72; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-72
Query Start/End: Original strand, 1192 - 1389
Target Start/End: Complemental strand, 9914707 - 9914507
Alignment:
Q  1192 ttctatttttattatgggtgctgctaaccagtg-----ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttaccta 1286  Q
    ||||||||||| || ||||||||||||||||||     || |||||| |||| ||||||||||||  |||||| ||||||||||| ||||||||||||||    
T  9914707 ttctatttttaata-gggtgctgctaaccagtgcccccggagcactgaataaaaaataataaatagacaataa-taaatgaatctcaattggtttaccta 9914610  T
Q  1287 aattaaagtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatc 1386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9914609 aattaaagtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatc 9914510  T
Q  1387 tac 1389  Q
    |||    
T  9914509 tac 9914507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-70
Query Start/End: Original strand, 1225 - 1389
Target Start/End: Complemental strand, 9075063 - 9074899
Alignment:
Q  1225 ggggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataaga 1324  Q
    |||||||| |||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  9075063 ggggcactagataagaaataataaataggcaataaataaatggatttcaattggtttacctaaattaaagtgagatataaatcaactaattaaaatgaga 9074964  T
Q  1325 tatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074963 tatagttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 9074899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-70
Query Start/End: Original strand, 1229 - 1389
Target Start/End: Original strand, 30674094 - 30674254
Alignment:
Q  1229 cactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatata 1328  Q
    |||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  30674094 cactggataaaaaataataaataggcaataaataaatgaatctcaattgttttacataaattaaagtgagatataagtcatctaattaaaataagatata 30674193  T
Q  1329 gttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30674194 gttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 30674254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-56
Query Start/End: Original strand, 1534 - 1709
Target Start/End: Complemental strand, 9074749 - 9074574
Alignment:
Q  1534 aaaagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaat 1632  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||     
T  9074749 aaaagattgaatatggtattgatgatgggagagagatattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaac 9074650  T
Q  1633 caagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattgccct 1709  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||| || |||||||||||| ||||||| ||||||    
T  9074649 caagtgagatccatttatttattgtctatttattgttctttatccggtg-cccgggggcaccggttagcactgccct 9074574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-39
Query Start/End: Original strand, 1536 - 1678
Target Start/End: Complemental strand, 9914342 - 9914199
Alignment:
Q  1536 aagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatca 1634  Q
    |||||||| ||||| |||||||||||  ||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||  |||||||    
T  9914342 aagattgaatatggaattgatgatggcagagagatattgaatatagcatttattaattttagttagttgaaatattttacactttaattaaagtaaatca 9914243  T
Q  1635 agtgacatccatttatttattgtctatttattgttccttatccg 1678  Q
    ||||| || ||||||||||||  |||||||||||||||| ||||    
T  9914242 agtgagattcatttatttattacctatttattgttccttgtccg 9914199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-37
Query Start/End: Original strand, 1545 - 1685
Target Start/End: Original strand, 30674406 - 30674545
Alignment:
Q  1545 tatggtattgatgatggtgagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatcc 1644  Q
    |||||||||||||||||  ||| |||||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||     
T  30674406 tatggtattgatgatggc-agaaatattgaatataacatttattaattttaattagttgaaatattttacattttaattaagataaatcaagtgagatct 30674504  T
Q  1645 atttatttattgtctatttattgttccttatccgatgcccc 1685  Q
    ||||||||||||  |||| ||||||| ||||||| ||||||    
T  30674505 atttatttattgcttattaattgttctttatccggtgcccc 30674545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 7e-29
Query Start/End: Original strand, 1569 - 1719
Target Start/End: Original strand, 39865304 - 39865454
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||| ||||| | |||| ||||||||| |||| ||| ||||||||| |||| ||| |||||| || |||||||||| |  |||||||||||    
T  39865304 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgagattcatttatttaattactatttattgt 39865403  T
Q  1669 tccttatccgatgccccgggggcaccagttagcattgcccttttattatta 1719  Q
    |||||||||  ||||||||||||||  ||||||||||||||| | ||||||    
T  39865404 tccttatccagtgccccgggggcactggttagcattgcccttattttatta 39865454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-20
Query Start/End: Original strand, 1569 - 1677
Target Start/End: Complemental strand, 4329714 - 4329606
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||| ||||| | |||| ||||||||| |||| ||||||||||||| |||| ||| |||||| ||| |||||||||||  ||||||| |||    
T  4329714 tattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatttactgt 4329615  T
Q  1669 tccttatcc 1677  Q
    |||||||||    
T  4329614 tccttatcc 4329606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-17
Query Start/End: Original strand, 1569 - 1708
Target Start/End: Complemental strand, 29770882 - 29770743
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    |||||| |||||| ||||| | |||| ||||||||| |||| ||| ||||||| | |||| ||| |||||| || |||||||||| |  |||||||||||    
T  29770882 tattgattatagcttttattatttttaattagttgacatatattatactttaactgagatgaattaagtgagattcatttatttaattactatttattgt 29770783  T
Q  1669 tccttatccgatgccccgggggcaccagttagcattgccc 1708  Q
    |||||||||  |||||||| | |||  |||||||||||||    
T  29770782 tccttatccagtgccccggagacactggttagcattgccc 29770743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1590 - 1677
Target Start/End: Original strand, 4330135 - 4330221
Alignment:
Q  1590 attttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatcc 1677  Q
    ||||| ||||||| | |||||||||| ||||||| |||| ||| |||||| ||||||||||||| ||  |||| ||||||||||||||    
T  4330135 attttaattagttaacatattttaca-tttaattgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatcc 4330221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1279 - 1338
Target Start/End: Complemental strand, 8373274 - 8373215
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||||| ||||||||||| | ||||||||| |||||||||||| ||| |||||||||||    
T  8373274 tttaccttaattaaagtgataaataagtcaattaattaaaataaaataaagttgtattta 8373215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1226 - 1320
Target Start/End: Original strand, 9074598 - 9074692
Alignment:
Q  1226 gggcactggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaat 1320  Q
    |||||| ||||||  || ||||||||  ||||||||||||| |||| | ||||||||||| ||||||||||  | |||  |||||||||||||||    
T  9074598 gggcaccggataaagaacaataaatagacaataaataaatggatctcacttggtttaccttaattaaagtgtaaaatatttcaactaattaaaat 9074692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1253 - 1323
Target Start/End: Complemental strand, 19037709 - 19037639
Alignment:
Q  1253 gcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataag 1323  Q
    ||||| ||||||| ||||| | ||| |||||||  |||||||||||| |||| ||||||||||||||||||    
T  19037709 gcaatcaataaatcaatctcacttgttttacctctattaaagtgagaaataaatcaactaattaaaataag 19037639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000009
Query Start/End: Original strand, 1253 - 1323
Target Start/End: Complemental strand, 32479946 - 32479876
Alignment:
Q  1253 gcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataag 1323  Q
    ||||||||| ||| ||||  | ||| |||||||| |||||||||||| |||| ||||||||||||||||||    
T  32479946 gcaataaatgaatcaatcccacttgttttacctatattaaagtgagaaataaatcaactaattaaaataag 32479876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1279 - 1335
Target Start/End: Complemental strand, 25571752 - 25571696
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtat 1335  Q
    ||||||| ||||||||||| | ||||||||| |||||||||||| ||| ||||||||    
T  25571752 tttaccttaattaaagtgataaataagtcaattaattaaaataaaatagagttgtat 25571696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1614 - 1693
Target Start/End: Original strand, 9074992 - 9075071
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcac 1693  Q
    |||||||||| || |||| ||| ||| |||||||||||||||| ||||||||| || ||||||   ||||||| ||||||    
T  9074992 cactttaatttaggtaaaccaattgaaatccatttatttattgcctatttattatttcttatctagtgccccgagggcac 9075071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1279 - 1338
Target Start/End: Original strand, 19037231 - 19037290
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||||| ||||||||||| | ||||||||| |||||||||||| | | |||||||||||    
T  19037231 tttaccttaattaaagtgataaataagtcaattaattaaaataaaagagagttgtattta 19037290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1251 - 1310
Target Start/End: Original strand, 26556636 - 26556695
Alignment:
Q  1251 aagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaac 1310  Q
    |||||||||||| |||||||| ||||| ||||||| ||||||  ||||| ||||||||||    
T  26556636 aagcaataaatagatgaatctcaattgatttacctcaattaatttgagaaataagtcaac 26556695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000005
Query Start/End: Original strand, 1659 - 1702
Target Start/End: Complemental strand, 28277560 - 28277517
Alignment:
Q  1659 tatttattgttccttatccgatgccccgggggcaccagttagca 1702  Q
    |||||||||||||||| ||  |||||||||||||||||||||||    
T  28277560 tatttattgttccttaaccagtgccccgggggcaccagttagca 28277517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-67; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-67
Query Start/End: Original strand, 1230 - 1389
Target Start/End: Original strand, 53153501 - 53153660
Alignment:
Q  1230 actggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatag 1329  Q
    ||||||||| |||||||||||| |||||||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53153501 actggataataaataataaataggcaataaataaatggatttcaattggtttatctaaattaaagtgagatataagtcaactaattaaaataagatatag 53153600  T
Q  1330 ttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  53153601 ttgtatttattgtttgtttttgtagcactaacatcatcaatgatgttatttatcatctac 53153660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-65
Query Start/End: Original strand, 1230 - 1389
Target Start/End: Original strand, 785426 - 785585
Alignment:
Q  1230 actggataagaaataataaataagcaataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatag 1329  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||| | |||||||| |||||| ||| || |||||||||||||||||||||    
T  785426 actggataagaaataataaatagacaataaataaatgaatcttaattggtttaacaaaattaaattgagatgtaaatccactaattaaaataagatatag 785525  T
Q  1330 ttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785526 ttgtatttattgtttgtttttgtagcactaacatcatcaattatgttatttatcatctac 785585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-60
Query Start/End: Original strand, 1254 - 1389
Target Start/End: Original strand, 30384736 - 30384871
Alignment:
Q  1254 caataaataaatgaatcttaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtatttattgtttgtttttgta 1353  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30384736 caataaataaatggatctcaattggtttacctaaattaaagtgagatataagtcaactaattaaaataagatataattgtatttattgtttgtttttgta 30384835  T
Q  1354 gcactaacatcatcaattatgttatttatcatctac 1389  Q
    ||||||||||||| ||||||||||||||||||||||    
T  30384836 gcactaacatcattaattatgttatttatcatctac 30384871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-37
Query Start/End: Original strand, 1534 - 1705
Target Start/End: Original strand, 785734 - 785906
Alignment:
Q  1534 aaaagattgattatggtattgatgatggt-gagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaat 1632  Q
    |||| ||||| ||| |||||||||||||  |||||||||||||||||||| |||| |||||| |||| ||| ||||||||||||||| |||||| |||||    
T  785734 aaaaaattgaatatagtattgatgatggcagagagatattgaatatagcaattattaattttaattaattgcaatattttacactttgattaaggtaaat 785833  T
Q  1633 caagtgacatccatttatttattgtctatttattgttccttatccgatgccccgggggcaccagttagcattg 1705  Q
    ||||||| |||||||||||||||| ||||||| |||||||||| |  |||  |||| ||||| ||||||||||    
T  785834 caagtgagatccatttatttattgcctatttaatgttccttattcagtgcatcgggagcaccggttagcattg 785906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-36
Query Start/End: Original strand, 1536 - 1657
Target Start/End: Original strand, 30385719 - 30385837
Alignment:
Q  1536 aagattgattatggtattgatgatggtgagagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaa 1635  Q
    |||||||| ||||||||||||||||   |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  30385719 aagattgaatatggtattgatgatg---agagatattgaatatatcatttattaattttaattagttgaaatattttacactttaattaaggtaaatcaa 30385815  T
Q  1636 gtgacatccatttatttattgt 1657  Q
     ||| |||||||||||||||||    
T  30385816 atgagatccatttatttattgt 30385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 1534 - 1655
Target Start/End: Original strand, 53153819 - 53153941
Alignment:
Q  1534 aaaagattgattatggtattgatgatggtga-gagatattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaat 1632  Q
    |||||||||| |||||||||||||||||  | ||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  53153819 aaaagattgaatatggtattgatgatggcaaagagatattgaatataacatttattaattttaattagttgaaatattttacactttaattaaggtaaat 53153918  T
Q  1633 caagtgacatccatttatttatt 1655  Q
    ||||||| || ||| ||||||||    
T  53153919 caagtgagattcatctatttatt 53153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-23
Query Start/End: Original strand, 1569 - 1706
Target Start/End: Original strand, 23566895 - 23567032
Alignment:
Q  1569 tattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattgt 1668  Q
    ||||||||||||| ||||| | |||| ||||||||| |||| ||| ||||||||| |||| ||| |||||| || |||||||||| |  |||||||||||    
T  23566895 tattgaatatagcttttattatttttaattagttgacatatattatactttaattgagatgaattaagtgatattcatttatttaattactatttattgt 23566994  T
Q  1669 tccttatccgatgccccgggggcaccagttagcattgc 1706  Q
    |||||||||  |||||| || ||||| |||||||||||    
T  23566995 tccttatccagtgcccccggagcaccggttagcattgc 23567032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1279 - 1338
Target Start/End: Original strand, 18715208 - 18715267
Alignment:
Q  1279 tttacctaaattaaagtgagatataagtcaactaattaaaataagatatagttgtattta 1338  Q
    ||||||| ||||||||||| | ||||||||| |||||||||||| | |||||||||||||    
T  18715208 tttaccttaattaaagtgataaataagtcaattaattaaaataaaagatagttgtattta 18715267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 1568 - 1677
Target Start/End: Original strand, 39737729 - 39737838
Alignment:
Q  1568 atattgaatatagcatttataaattttgattagttgaaatattttacactttaattaagataaatcaagtgacatccatttatttattgtctatttattg 1667  Q
    |||||||||||||| ||||| | |||| ||||||| | |||| ||| | ||||||| |||| ||| || | | ||| ||||||||| |  ||||||||||    
T  39737729 atattgaatatagcttttattatttttaattagttaacatatattatattttaattgagatgaattaaataagatctatttatttaattactatttattg 39737828  T
Q  1668 ttccttatcc 1677  Q
    ||||||||||    
T  39737829 ttccttatcc 39737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1614 - 1666
Target Start/End: Complemental strand, 53153567 - 53153515
Alignment:
Q  1614 cactttaattaagataaatcaagtgacatccatttatttattgtctatttatt 1666  Q
    |||||||||| ||||||| ||| ||| |||||||||||||||| |||||||||    
T  53153567 cactttaatttagataaaccaattgaaatccatttatttattgcctatttatt 53153515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 1203 - 1273
Target Start/End: Original strand, 23566409 - 23566477
Alignment:
Q  1203 ttatgggtgctgctaaccagtgggggcactggataagaaataataaataagcaataaataaatgaatctta 1273  Q
    ||||||||||||||||||||| | ||||||||||||| || ||| |||| ||| ||||||||| |||||||    
T  23566409 ttatgggtgctgctaaccagt-gcggcactggataag-aacaattaatatgcattaaataaataaatctta 23566477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000008
Query Start/End: Original strand, 1305 - 1338
Target Start/End: Original strand, 39737279 - 39737312
Alignment:
Q  1305 gtcaactaattaaaataagatatagttgtattta 1338  Q
    |||||||||||||||||||| |||||||||||||    
T  39737279 gtcaactaattaaaataagaaatagttgtattta 39737312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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