View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18404_low_10 (Length: 679)
Name: NF18404_low_10
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_10 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 19 - 670
Target Start/End: Complemental strand, 28609083 - 28608432
Alignment:
| Q |
19 |
ccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609083 |
ccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaggagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcc |
28608984 |
T |
|
| Q |
119 |
tccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaac |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608983 |
tccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaac |
28608884 |
T |
|
| Q |
219 |
aaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgt |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608883 |
aaataatcccacagagcaaggtgcactttgcatcacattcaagtttatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgt |
28608784 |
T |
|
| Q |
319 |
ttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgttt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608783 |
ttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcgtgaatggttgcatattcggacacaacatttaacgttt |
28608684 |
T |
|
| Q |
419 |
ctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
28608683 |
ctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatcttgtaagattttgtgttccagattg |
28608584 |
T |
|
| Q |
519 |
gccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608583 |
gccactaggcttctccatatgagaagcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtg |
28608484 |
T |
|
| Q |
619 |
gcattgaaagattcaatgaggctaataacccctacagcctgacgagtattat |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28608483 |
gcattgaaagattcaatgaggctaataacccctacagcttgacgagtattat |
28608432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 32 - 668
Target Start/End: Original strand, 437834 - 438470
Alignment:
| Q |
32 |
catgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagc |
131 |
Q |
| |
|
||||||||| |||||| |||||| |||| ||| |||||| |||||||||||||||| | ||||||||||| | |||||| ||| |||||||| ||||| |
|
|
| T |
437834 |
catgacttgaggtgtctactatttcagcattatcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagc |
437933 |
T |
|
| Q |
132 |
taatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccacc |
231 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||| ||| || ||||||| |||||| |
|
|
| T |
437934 |
taaggcttcgcgatcatcaggaccaccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaatattcccaca |
438033 |
T |
|
| Q |
232 |
gagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| | ||| || ||||||||| | ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
438034 |
gagcaaggtgcactttgcatcacattcaagtttatatctttgtatgcagtattagttgtttcgagtgcaccttctgaacttagttgtttgtggaatggaa |
438133 |
T |
|
| Q |
332 |
ggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagc |
431 |
Q |
| |
|
|||||||||| |||||| |||||| ||| | | |||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||||| ||||| |
|
|
| T |
438134 |
ggagaatcaaacttgtacatttttcattagccgagttgtatatatcttcgtgaatggttgcatagtttgacacaacatttagtgtttggactctaatagc |
438233 |
T |
|
| Q |
432 |
atcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttc |
531 |
Q |
| |
|
||||||||||||| ||| ||||||||| |||| ||| ||||||||||||| ||||||| |||||||||||||||| |||||||||||||| || |
|
|
| T |
438234 |
atcatatgcctctttgaatgcttcaaaggtattggtaatgctttctaactctagctgggattgtgtaagattttgtgttccagattggccactagatttt |
438333 |
T |
|
| Q |
532 |
tccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagatt |
631 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||||||||||| ||| |
|
|
| T |
438334 |
tccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatatt |
438433 |
T |
|
| Q |
632 |
caatgaggctaataacccctacagcctgacgagtatt |
668 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
438434 |
caatgaggctaataactcctacggcctgacgagtatt |
438470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 65 - 670
Target Start/End: Complemental strand, 13660408 - 13659803
Alignment:
| Q |
65 |
caaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaa |
164 |
Q |
| |
|
||||||||||||||||||||| | | | |||||||| ||| || |||||||||||| |||||||| ||||| |||||||||||||||||| ||| |
|
|
| T |
13660408 |
caaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaa |
13660309 |
T |
|
| Q |
165 |
gatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttg |
264 |
Q |
| |
|
|||||||||||| ||||| |||||||||| || ||||||||||||||||||||||| | |||||| |||||||||| | |||||||||||||| ||| |
|
|
| T |
13660308 |
gatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaagattcccacagagcaaggtgaagtttgcatcacattctggttt |
13660209 |
T |
|
| Q |
265 |
atatctttgaacgcaacatcagttgtttcaaatgcaccttccggacttagttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaacta |
364 |
Q |
| |
|
||||||||| | |||||| ||||||||| | ||||||| | ||||| ||||| ||||||||||| | ||||| |||||| ||||||| ||| | |
|
|
| T |
13660208 |
atatctttgtatgcaacactagttgtttcgagtgcacctaatgaacttaagtgtttatggaatggaagtataatcatgcttgtgcgtttttcattagcag |
13660109 |
T |
|
| Q |
365 |
aattgtatatgtcttcctgaatggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttatt |
464 |
Q |
| |
|
| || |||||||| || |||||||||| ||| |||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
13660108 |
agttatatatgtcctcatgaatggttgaataggatgacacaacatttaaggtttcgactctgacagcatcatatgcctctccaagtgcttcaaatgtatt |
13660009 |
T |
|
| Q |
465 |
atcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcaccatcacgt |
564 |
Q |
| |
|
|| ||| |||||| ||||| |||||||| ||||||||||| | || || |||| ||||||||| |||||||||| ||||||| ||||||| |||| |
|
|
| T |
13660008 |
attaatgctttcttgctctacttgggatcttgtaagattttgcgctccaggttggttactaggcttatccatatgagcggcaacaagtgcaccagtacgt |
13659909 |
T |
|
| Q |
565 |
ccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcctgacgag |
664 |
Q |
| |
|
|| |||||||| |||||||||||| |||| ||| |||||||||| |||||| |||||||||||||||| |||||| ||||||||| |||||| |||| |
|
|
| T |
13659908 |
cctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattctagtagcattgaaagattcaacgaggctgataacccctgtagcctggcgag |
13659809 |
T |
|
| Q |
665 |
tattat |
670 |
Q |
| |
|
||||| |
|
|
| T |
13659808 |
cattat |
13659803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 114 - 668
Target Start/End: Complemental strand, 13652859 - 13652305
Alignment:
| Q |
114 |
catcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
213 |
Q |
| |
|
|||||||||||| |||| ||| ||||| | |||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||||||| |
|
|
| T |
13652859 |
catcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacga |
13652760 |
T |
|
| Q |
214 |
tcaacaaataatcccaccgagcaaggtgcactttgcatcacattcaagttgatatctttgaacgcaacatcagttgtttcaaatgcaccttccggactta |
313 |
Q |
| |
|
|||||||| | |||||| |||||||||||| ||||||||||||||| ||| ||||||||| | |||||| ||||||||| | ||||||| | ||||| |
|
|
| T |
13652759 |
tcaacaaagattcccacagagcaaggtgcagtttgcatcacattcaggtttatatctttgtatgcaacactagttgtttcgagtgcacctaatgaactta |
13652660 |
T |
|
| Q |
314 |
gttgtttgtggaatggaaggagaatcaagcttgtatgtttttcgttaactaaattgtatatgtcttcctgaatggttgcatattcggacacaacatttaa |
413 |
Q |
| |
|
||||| ||||||||||| | ||||| |||||| |||||||| ||| || |||| |||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
13652659 |
agtgtttatggaatggaagtataatcatgcttgtgtgtttttcattagctgaattatatatgtcctcgtgaatggttgcataggatgacacaacatttaa |
13652560 |
T |
|
| Q |
414 |
cgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttcta |
513 |
Q |
| |
|
||| ||||| | |||||| || ||||||| | |||||||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || | |
|
|
| T |
13652559 |
ggttcggactctaacagcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctcca |
13652460 |
T |
|
| Q |
514 |
gattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtc |
613 |
Q |
| |
|
| ||| |||||||||| |||||||||| |||||||| |||||| |||||| |||||||| ||||||||||| ||||| ||| |||||||||| || |
|
|
| T |
13652459 |
ggttgcacactaggcttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattc |
13652360 |
T |
|
| Q |
614 |
tagtggcattgaaagattcaatgaggctaataacccctacagcctgacgagtatt |
668 |
Q |
| |
|
|||||||||||||||| | ||||||| | |||||||||| ||| || |||||||| |
|
|
| T |
13652359 |
tagtggcattgaaagactgaatgaggttgataacccctatagcgtggcgagtatt |
13652305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University