View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_101 (Length: 322)

Name: NF18404_low_101
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_101
NF18404_low_101
[»] chr6 (19 HSPs)
chr6 (17-215)||(29136409-29136607)
chr6 (20-254)||(29123220-29123451)
chr6 (109-254)||(32745699-32745844)
chr6 (112-254)||(29144360-29144502)
chr6 (150-247)||(29299150-29299247)
chr6 (112-247)||(29152923-29153058)
chr6 (112-254)||(29130393-29130535)
chr6 (124-254)||(34279370-34279500)
chr6 (151-227)||(32973515-32973591)
chr6 (112-230)||(23216815-23216933)
chr6 (133-227)||(21379307-21379401)
chr6 (113-245)||(29149712-29149844)
chr6 (112-254)||(34259099-34259241)
chr6 (133-178)||(29012044-29012089)
chr6 (166-247)||(34281046-34281127)
chr6 (154-255)||(25320190-25320291)
chr6 (154-255)||(26149883-26149984)
chr6 (167-210)||(32958423-32958466)
chr6 (133-211)||(21375215-21375293)
[»] scaffold0134 (1 HSPs)
scaffold0134 (112-252)||(17097-17237)
[»] chr4 (7 HSPs)
chr4 (158-254)||(9603448-9603544)
chr4 (112-254)||(9594599-9594741)
chr4 (151-254)||(9573444-9573548)
chr4 (160-254)||(54295949-54296043)
chr4 (124-252)||(9568300-9568431)
chr4 (124-254)||(9582815-9582945)
chr4 (124-254)||(9588510-9588640)
[»] chr5 (6 HSPs)
chr5 (112-254)||(27174314-27174456)
chr5 (154-254)||(42777087-42777187)
chr5 (133-254)||(42782260-42782381)
chr5 (164-245)||(40548366-40548447)
chr5 (133-254)||(41227002-41227123)
chr5 (113-245)||(37512003-37512135)
[»] chr7 (2 HSPs)
chr7 (128-230)||(42445424-42445526)
chr7 (112-206)||(25627341-25627435)
[»] scaffold0129 (1 HSPs)
scaffold0129 (133-246)||(34379-34492)
[»] chr2 (3 HSPs)
chr2 (199-251)||(7525013-7525065)
chr2 (193-251)||(7436181-7436239)
chr2 (137-251)||(7499768-7499882)
[»] chr1 (1 HSPs)
chr1 (133-245)||(51875534-51875646)
[»] scaffold0831 (1 HSPs)
scaffold0831 (117-179)||(2107-2169)
[»] scaffold0054 (1 HSPs)
scaffold0054 (169-210)||(38589-38630)
[»] chr8 (1 HSPs)
chr8 (128-176)||(3368670-3368718)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 29136607 - 29136409
Alignment:
Q  17 cctaaagattatacaaaacttgcagctcctggtaatgtggccaggtcgtaacctttaggagtaaagatgatccgtcatcggaacaagaattagatgataa 116  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||  |||||||||||||||    
T  29136607 cctaaagattatacaaaacttgtagctgctggtaatgtggccaggtcgtaacctttaggagtagagatgatccatcatcagaaagagaattagatgataa 29136508  T
Q  117 gaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaa 215  Q
     ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29136507 caaattgttgcggaacatgttcatgaaacgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaa 29136409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 29123451 - 29123220
Alignment:
Q  20 aaagattatacaaaacttgcagctcctggtaatgtggccaggtcgtaacctttaggagtaaagatgatccgtcatcggaacaagaattagatgataagaa 119  Q
    ||||| ||||||||||||||| || |||   || |||||| || |||||||||| || || ||||| |||||| |   || |||||||||||||||||||    
T  29123451 aaagagtatacaaaacttgcatctgctgcatatctggccatgttgtaacctttaagaatagagatgctccgtcgt---aataagaattagatgataagaa 29123355  T
Q  120 attgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaacttt 219  Q
    ||||||| |||| ||||||||||||||||||| |||| | ||||||||||||||||||| |||| ||||||  || || ||||||||||||||||| |||    
T  29123354 attgttgcggaacatgttcatgaaatgagtatcttcagacaagagagaccatgatttgcgaacggattcaactcgtttaaaagatttaagaggcaatttt 29123255  T
Q  220 gatagaatggaaaaagcaatatcatcaggtatata 254  Q
    ||||||||||| || ||||||||||||| ||||||    
T  29123254 gatagaatggagaaggcaatatcatcagatatata 29123220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 109 - 254
Target Start/End: Original strand, 32745699 - 32745844
Alignment:
Q  109 gatgataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaa 208  Q
    |||||||||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  || || ||||||||||    
T  32745699 gatgataagaaattgttgcgaaacatgttcatgaaatgagtattttcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaa 32745798  T
Q  209 gaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 254  Q
    |||| |  |||||||| ||||| || ||||||||||||||||||||    
T  32745799 gaggtagttttgataggatggagaaggcaatatcatcaggtatata 32745844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 29144502 - 29144360
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||| ||||| | ||||||| |||  ||||| |||||||||||||    
T  29144502 gataagaaattgttgcggaacatgttcatgaaatgagtatcttcaaataagagataccaagatttacgaacgcatccaaatcgcttcaaagatttaagag 29144403  T
Q  212 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 254  Q
    |||| || ||||||||||| || |||||||||||  |||||||    
T  29144402 gcaatttcgatagaatggataaggcaatatcatcgagtatata 29144360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 247
Target Start/End: Complemental strand, 29299247 - 29299150
Alignment:
Q  150 attttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcag 247  Q
    ||||||||| ||||||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  29299247 attttcaaacaagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttgagagaatggaaaaagctatatcatcag 29299150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 247
Target Start/End: Original strand, 29152923 - 29153058
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    ||||||||||| ||| |||| ||||||||||| |||   |||||| ||| ||| ||||||||||||| ||| ||||||| | ||||||||||||||||||    
T  29152923 gataagaaattattgcggaacatgttcatgaagtgatgtttttcagataggagggaccatgatttgcgaacacattcaaaatgcttgaaagatttaagag 29153022  T
Q  212 gcaactttgatagaatggaaaaagcaatatcatcag 247  Q
    |||| ||||| |||||||| || |||||||||||||    
T  29153023 gcaattttgagagaatggagaaggcaatatcatcag 29153058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 112 - 254
Target Start/End: Complemental strand, 29130535 - 29130393
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    ||||||| | |||||||||| |||||||||||   | |||||||| | ||||||||||||||||| | |||| ||||||  |||||||||||||||||||    
T  29130535 gataagagactgttgtggaacatgttcatgaacaaactattttcatacaagagagaccatgatttacgaacggattcaaatcgcttgaaagatttaagag 29130436  T
Q  212 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 254  Q
    |||||||||| |||||||| ||   |||||||| |||||||||    
T  29130435 gcaactttgagagaatggagaagtgaatatcatgaggtatata 29130393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 34279370 - 34279500
Alignment:
Q  124 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 223  Q
    |||||||| ||||||||||| |||  ||||||| |||| ||| |||||||||| ||||| ||||||| || |||||||||||||||||| || ||||| |    
T  34279370 ttgtggaacatgttcatgaagtgatgattttcagataaaagataccatgatttacaaacacattcaaaactcttgaaagatttaagaggtaattttgaaa 34279469  T
Q  224 gaatggaaaaagcaatatcatcaggtatata 254  Q
    ||||||| || ||||||||||||| ||||||    
T  34279470 gaatggagaaggcaatatcatcagatatata 34279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 32973515 - 32973591
Alignment:
Q  151 ttttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 227  Q
    |||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||    
T  32973515 ttttcagataagagagaccatgatttacaaacacattcaaaacgcttgaaagatttaagaggcaattttgatagaat 32973591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 23216815 - 23216933
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    |||||||| || ||| | || |||||||||||||||| ||| |||| |||||||||||||||||||| ||| |||||||  | ||| |||||||||||||    
T  23216815 gataagaagttattgcgaaacatgttcatgaaatgagaattatcaattaagagagaccatgatttgcgaacacattcaaatctcttcaaagatttaagag 23216914  T
Q  212 gcaactttgatagaatgga 230  Q
    | ||||| |||||||||||    
T  23216915 gtaacttcgatagaatgga 23216933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 21379307 - 21379401
Alignment:
Q  133 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 227  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |  |||||| |||  ||||| |||||||||||||| ||||| ||||||||    
T  21379307 atgttcatgaaataagtgttttcaaataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaat 21379401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 29149712 - 29149844
Alignment:
Q  113 ataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagagg 212  Q
    |||||||||||| | | || ||| ||||||| ||| |||| ||| | ||||||||||||||||||| |||||||||||  |  || ||||||||||||||    
T  29149712 ataagaaattgtggcgaaacatgctcatgaagtgattattctcagacaagagagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagagg 29149811  T
Q  213 caactttgatagaatggaaaaagcaatatcatc 245  Q
    ||| ||||| |||||||| || || ||||||||    
T  29149812 caattttgagagaatggagaaggctatatcatc 29149844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 34259099 - 34259241
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    |||| |||||||||| |||| |||||||||||| |||| | ||  |||||||||||||||||||| | ||||||| |||  ||||| ||||| |||||||    
T  34259099 gatatgaaattgttgcggaacatgttcatgaaacgagtgtcttgtaataagagagaccatgatttacgaacgcatccaaatcgctttaaagacttaagag 34259198  T
Q  212 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 254  Q
    | |  ||   |||||| || || |||||||||| |||||||||    
T  34259199 gtagtttgtgtagaatagagaaggcaatatcatgaggtatata 34259241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 29012089 - 29012044
Alignment:
Q  133 atgttcatgaaatgagtattttcaaataagagagaccatgatttgc 178  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  29012089 atgttcatgaaatgagtattttcaaacaagagagaccatgatttgc 29012044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 34281127 - 34281046
Alignment:
Q  166 gaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcag 247  Q
    ||||||||||||| ||  || |||| |||||||||||||||||||||||| ||||| ||||| || || |||||||||||||    
T  34281127 gaccatgatttgcgaagacactcaaaacgcttgaaagatttaagaggcaattttgagagaatagagaaggcaatatcatcag 34281046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 25320190 - 25320291
Alignment:
Q  154 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 253  Q
    ||||||||||| ||||||||||| | ||  |||| ||  ||||| ||||||||||| ||||||||||||||||| ||||  || |||||||| | |||||    
T  25320190 tcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctgatatat 25320289  T
Q  254 aa 255  Q
    ||    
T  25320290 aa 25320291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 255
Target Start/End: Original strand, 26149883 - 26149984
Alignment:
Q  154 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 253  Q
    ||||||||||| ||||||||||| | ||  |||| ||  ||||| ||||||||||| ||||||||||||||||| ||||  || |||||||| | |||||    
T  26149883 tcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctgatatat 26149982  T
Q  254 aa 255  Q
    ||    
T  26149983 aa 26149984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 32958423 - 32958466
Alignment:
Q  167 accatgatttgcaaacgcattcaatacgcttgaaagatttaaga 210  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||    
T  32958423 accatgatttgcaaacgaattcaaaacgcatgaaagatttaaga 32958466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 21375215 - 21375293
Alignment:
Q  133 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    ||||||||||||| | | |||||||||||||| |||||||||||  | |||||| |||  | ||| |||||||||||||    
T  21375215 atgttcatgaaataaatgttttcaaataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagag 21375293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 252
Target Start/End: Original strand, 17097 - 17237
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    ||||||||||| ||| | ||  |||||||||||| || ||| |||| ||||||||||||||||||||||||||||||||  | ||| |||||||||||||    
T  17097 gataagaaattattgcgaaacttgttcatgaaataagaattatcaattaagagagaccatgatttgcaaacgcattcaaatctcttcaaagatttaagag 17196  T
Q  212 gcaactttgatagaatggaaaaagcaatatcatcaggtata 252  Q
    ||||||||||||||||||| ||   |||||| |||||||||    
T  17197 gcaactttgatagaatggataagctaatatcgtcaggtata 17237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 9603448 - 9603544
Alignment:
Q  158 ataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 254  Q
    ||||||||||||||| ||| |||| ||||||||  ||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||||||||    
T  9603448 ataagagagaccatggtttacaaaagcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 9603544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 9594599 - 9594741
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    ||||||| ||||||| |||| ||||||||||| |||   |||||| ||||||||||||||| ||||| ||| |||||||  ||||| |||||||||| ||    
T  9594599 gataagagattgttgcggaacatgttcatgaagtgatcgttttcacataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaatag 9594698  T
Q  212 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 254  Q
    | || || ||||||||||| || | ||||||||||| ||||||    
T  9594699 gtaatttagatagaatggagaaggaaatatcatcagctatata 9594741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 9573548 - 9573444
Alignment:
Q  151 ttttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagc-aatatcatcaggt 249  Q
    ||||||| ||| |||||||||||||||| ||| |||||||  ||||| |||||||||| |||||| || ||||||||||| || || |||||||||||||    
T  9573548 ttttcaattaacagagaccatgatttgcgaacacattcaaatcgcttaaaagatttaataggcaatttggatagaatggagaaggcaaatatcatcaggt 9573449  T
Q  250 atata 254  Q
    |||||    
T  9573448 atata 9573444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Original strand, 54295949 - 54296043
Alignment:
Q  160 aagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatata 254  Q
    ||||||||||||||| | | |||||||||||  || || ||||||||||||||||  ||||||| |||||| || | ||||||||||||||||||    
T  54295949 aagagagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatata 54296043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 9568431 - 9568300
Alignment:
Q  124 ttgtggaatatgttcatgaaatgagtattttcaaataaga---gagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttg 220  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||   ||||||||||||| | |||||||||||  ||||| | |||||||| |||||| || |    
T  9568431 ttgtagaacatgttcatgaagtgagggttttcagataagatcagagaccatgatttacgaacgcattcaaatcgcttaatagatttaaaaggcaatttgg 9568332  T
Q  221 atagaatggaaaaagcaatatcatcaggtata 252  Q
    ||||||| || || ||||||||||||| ||||    
T  9568331 atagaatagagaaggcaatatcatcagatata 9568300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 9582815 - 9582945
Alignment:
Q  124 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 223  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||||||||||| ||||| || ||||||||  || || |  ||||||| |||||| || ||||    
T  9582815 ttgtagaacatgttcatgaagtgagggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggata 9582914  T
Q  224 gaatggaaaaagcaatatcatcaggtatata 254  Q
     ||| || || ||||| ||||||||||||||    
T  9582915 aaatagagaaggcaatttcatcaggtatata 9582945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 9588510 - 9588640
Alignment:
Q  124 ttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgata 223  Q
    |||| ||| ||||||||||| ||||  |||||| ||||||||||||||| ||||| || ||||||||  || || |  ||||||| |||||| || ||||    
T  9588510 ttgtagaacatgttcatgaagtgagggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggata 9588609  T
Q  224 gaatggaaaaagcaatatcatcaggtatata 254  Q
     ||| || || ||||| ||||||||||||||    
T  9588610 aaatagagaaggcaatttcatcaggtatata 9588640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 112 - 254
Target Start/End: Original strand, 27174314 - 27174456
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagag 211  Q
    ||||||||||||||  |||  |||||||||||| ||| |||||||||||| || || ||||||||||  |||||| |||  ||||| |||||||| ||||    
T  27174314 gataagaaattgttacggaccatgttcatgaaaagaggattttcaaataaaagtgatcatgatttgcgtacgcatccaaatcgcttcaaagatttcagag 27174413  T
Q  212 gcaactttgatagaatggaaaaagcaatatcatcaggtatata 254  Q
    | || ||||||||| | || || | |||||||||| |||||||    
T  27174414 gtaattttgatagatttgagaaggtaatatcatcatgtatata 27174456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 42777187 - 42777087
Alignment:
Q  154 tcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtatat 253  Q
    |||||||||||||||||||||||||| || |||||||  || |||   ||||||| ||| || ||||| ||||| || ||||||||||||||| ||||||    
T  42777187 tcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaatatcatcatgtatat 42777088  T
Q  254 a 254  Q
    |    
T  42777087 a 42777087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 42782381 - 42782260
Alignment:
Q  133 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 232  Q
    ||||||||||||  || |||||||||||  || ||||||||||| |  |||||| |||  ||||| ||||||||||  || || ||||||||||| || |    
T  42782381 atgttcatgaaaaaaggattttcaaatagaagtgaccatgatttacgtacgcatccaaatcgcttcaaagatttaatcggtaattttgatagaattgaga 42782282  T
Q  233 aagcaatatcatcaggtatata 254  Q
    | | |||||||||| |||||||    
T  42782281 aggtaatatcatcatgtatata 42782260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 40548447 - 40548366
Alignment:
Q  164 gagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatc 245  Q
    ||||||||||||| |  | ||||||||  ||||| |||||||||| ||| |  ||| ||||||||||||| |||||||||||    
T  40548447 gagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaatatcatc 40548366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 254
Target Start/End: Complemental strand, 41227123 - 41227002
Alignment:
Q  133 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 232  Q
    ||||||||||||  || |||||||||||  || ||||||||||| || | ||||  ||  ||||| ||||||||||  || || ||||||||||| || |    
T  41227123 atgttcatgaaaaaaggattttcaaatagaagggaccatgatttacatatgcatcgaaatcgctttaaagatttaatcggtaattttgatagaattgaga 41227024  T
Q  233 aagcaatatcatcaggtatata 254  Q
    | | |||||||||| |||||||    
T  41227023 aggtaatatcatcatgtatata 41227002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 245
Target Start/End: Complemental strand, 37512135 - 37512003
Alignment:
Q  113 ataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagagg 212  Q
    ||||||||||||||  ||| ||| |||| || ||||  |||||||  ||  |||||||||||||||| ||  ||||||  || || |||||||| |||||    
T  37512135 ataagaaattgttgctgaacatgctcataaattgagggttttcaagcaattgagaccatgatttgcatacatattcaaatcgtttcaaagatttgagagg 37512036  T
Q  213 caactttgatagaatggaaaaagcaatatcatc 245  Q
    ||  ||||||| |||||| || ||||| |||||    
T  37512035 cagttttgataaaatggagaaggcaatgtcatc 37512003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 230
Target Start/End: Complemental strand, 42445526 - 42445424
Alignment:
Q  128 ggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaat 227  Q
    |||| |||||||||||||||   |||||| |||||||||||||  |||| | ||| |||||||  ||||| |||||||||||||| || ||||||| |||    
T  42445526 ggaacatgttcatgaaatgatggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataat 42445427  T
Q  228 gga 230  Q
    |||    
T  42445426 gga 42445424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 25627435 - 25627341
Alignment:
Q  112 gataagaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagattt 206  Q
    |||| |||||| ||| |||| ||| ||||||||  ||  ||||||||||||||||||||||||||   ||||||| ||  |||||| ||||||||    
T  25627435 gatatgaaattattgcggaacatggtcatgaaagaagggttttcaaataagagagaccatgatttcttaacgcatccagaacgcttcaaagattt 25627341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 246
Target Start/End: Original strand, 34379 - 34492
Alignment:
Q  133 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 232  Q
    ||||| ||||||| || ||| ||||||||| ||||||||||||| |  |||||   || ||| ||  |||||||||||||||| |||||||||||| |||    
T  34379 atgtttatgaaattaggattctcaaataagtgagaccatgatttacgtacgcaactaaaacgttttgaagatttaagaggcaattttgatagaatgaaaa 34478  T
Q  233 aagcaatatcatca 246  Q
    | |||| |||||||    
T  34479 atgcaagatcatca 34492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 7525013 - 7525065
Alignment:
Q  199 aaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtat 251  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||    
T  7525013 aaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 7525065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 7436181 - 7436239
Alignment:
Q  193 cgcttgaaagatttaagaggcaactttgatagaatggaaaaagcaatatcatcaggtat 251  Q
    ||||| ||||||||||||||||| |||||||||||||| |  |||| ||||||||||||    
T  7436181 cgcttcaaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtat 7436239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 7499768 - 7499882
Alignment:
Q  137 tcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaaaagc 236  Q
    |||| |||||||||| |||||||||||||| ||||||||| || |||||  |||  ||||| |||| ||| |  ||||| ||||||| ||||   || ||    
T  7499768 tcataaaatgagtatcttcaaataagagagtccatgatttacatacgcaaccaaaccgcttcaaagtttttaccggcaattttgatacaatgagcaatgc 7499867  T
Q  237 aatatcatcaggtat 251  Q
    |||||||||| ||||    
T  7499868 aatatcatcatgtat 7499882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 51875534 - 51875646
Alignment:
Q  133 atgttcatgaaatgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaactttgatagaatggaaa 232  Q
    |||||||||||| ||| |||||| |||||||| ||||||||||| || || ||| |||  ||||| ||||||| |||||| |  ||||||||||| || |    
T  51875534 atgttcatgaaacgaggattttcgaataagagtgaccatgatttacatacacatccaaatcgctttaaagattgaagaggtagttttgatagaatcgaga 51875633  T
Q  233 aagcaatatcatc 245  Q
    |  ||||||||||    
T  51875634 agacaatatcatc 51875646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 2107 - 2169
Alignment:
Q  117 gaaattgttgtggaatatgttcatgaaatgagtattttcaaataagagagaccatgatttgca 179  Q
    |||||||||| | || || ||||||||||||| || ||||||||| ||||||||||| |||||    
T  2107 gaaattgttgcgaaacattttcatgaaatgaggatcttcaaataaaagagaccatgacttgca 2169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 38630 - 38589
Alignment:
Q  169 catgatttgcaaacgcattcaatacgcttgaaagatttaaga 210  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  38630 catgatttgcaaatggattcaaaacgcttgaaagatttaaga 38589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 3368670 - 3368718
Alignment:
Q  128 ggaatatgttcatgaaatgagtattttcaaataagagagaccatgattt 176  Q
    |||| |||| |||||||| ||  ||||||||||||||||||||||||||    
T  3368670 ggaacatgtccatgaaataagggttttcaaataagagagaccatgattt 3368718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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