View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_102 (Length: 318)

Name: NF18404_low_102
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_102
NF18404_low_102
[»] chr5 (6 HSPs)
chr5 (21-313)||(15807444-15807736)
chr5 (58-170)||(9575310-9575422)
chr5 (60-159)||(41859542-41859641)
chr5 (19-170)||(42629498-42629649)
chr5 (53-153)||(1040119-1040219)
chr5 (61-167)||(42637224-42637330)
[»] chr8 (2 HSPs)
chr8 (21-234)||(3367655-3367868)
chr8 (234-306)||(3367529-3367598)
[»] chr7 (1 HSPs)
chr7 (19-234)||(45866909-45867124)
[»] chr2 (1 HSPs)
chr2 (86-167)||(16921102-16921183)
[»] chr3 (1 HSPs)
chr3 (234-298)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 21 - 313
Target Start/End: Complemental strand, 15807736 - 15807444
Alignment:
Q  21 caaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807736 caaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtt 15807637  T
Q  121 tggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807636 tggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaa 15807537  T
Q  221 gaaaaaacaattagttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctgtgctcct 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807536 gaaaaaacaattagttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctgtgctcct 15807444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 9575422 - 9575310
Alignment:
Q  58 catcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttg 157  Q
    |||||||| ||| || |||| ||||| || |||||||| ||||||||||||||| | |||| | ||||| |||||| |||||||| ||| | ||||||||    
T  9575422 catcctataggagttggtaaaaagggtgacatattctttagaaaaaaggataatcaattagctaggtttaatttaatcacccagaaaattgtagagcttg 9575323  T
Q  158 gtgttaaaggtga 170  Q
    |||||||||||||    
T  9575322 gtgttaaaggtga 9575310  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 41859641 - 41859542
Alignment:
Q  60 tcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggt 159  Q
    |||||||||| || ||||||| || ||||| || ||| | ||||||||||||||  |||||| |||| ||||||||||||||||||| ||||| ||||||    
T  41859641 tcctattggagttggtaagaaaggagatatgtttttccggaaaaaggataatgaactagttttgtttaatttaagcacccagagaattgaagaccttggt 41859542  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 42629649 - 42629498
Alignment:
Q  19 atcaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttag 118  Q
    |||||||| |||||||| ||||| ||| |  |  |||| |||||||||||| || |||| || || ||||||| ||| | ||||||||||||  |  |||    
T  42629649 atcaaactttttattgtgggtccgttgacctgtgttgagcatcctattggagttggtaaaaatggtgatatatacttgaaaaaaaaggataacaaactag 42629550  T
Q  119 tttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtga 170  Q
    |||| ||| |||||| |||||| | ||| |||||||||||||| ||||||||    
T  42629549 tttgttttaatttaatcacccaaaaaattgaagagcttggtgtcaaaggtga 42629498  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 1040219 - 1040119
Alignment:
Q  53 ttgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaaga 152  Q
    |||| |||||||||||| |  |||||||||  ||||||||||| |||||||| ||  |||| |||||||||||| | |||||||| || ||||| |||||    
T  1040219 ttgagcatcctattggagtcggtaagaaggaagatatattctttagaaaaaacgacgatgaattagtttggtttaacttaagcactcaaagaattgaaga 1040120  T
Q  153 g 153  Q
    |    
T  1040119 g 1040119  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 42637330 - 42637224
Alignment:
Q  61 cctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtg 160  Q
    ||||||||| |  ||||||| || ||||||||||| |||||||| ||| ||||  ||||||| ||| ||||||| || || |||||| || |  ||||||    
T  42637330 cctattggagtgagtaagaatggtgatatattctttagaaaaaacgatgatgaactagtttgctttaatttaagtacacaaagaatccaacaatttggtg 42637231  T
Q  161 ttaaagg 167  Q
    |||||||    
T  42637230 ttaaagg 42637224  T

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Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 234
Target Start/End: Complemental strand, 3367868 - 3367655
Alignment:
Q  21 caaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttagtt 120  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||  | ||    
T  3367868 caaactctttattgtaggtcctatgcgtgacattgaacatcctattggtattggcaagaagggcgatatattcttcagaaaaaaagataatgagcaaatt 3367769  T
Q  121 tggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttgaaa 220  Q
    || ||  ||||||||||| ||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||| ||||||||||    
T  3367768 tgtttaaatttaagcacctagagaattgaagagcttggtgttaaaggtggcttgtgttgccggataatgatttataaggaaagccttctgccgcttgaaa 3367669  T
Q  221 gaaaaaacaattag 234  Q
    ||||||||||||||    
T  3367668 gaaaaaacaattag 3367655  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 3367598 - 3367529
Alignment:
Q  234 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattggctatctg 306  Q
    ||||||||||| ||| | ||||||||||||   |||| |||||||||||| ||||||||||||||| ||||||    
T  3367598 gttttattttagtttttactttgtgagcat---aatgatatggcaatacatcattactgatattggttatctg 3367529  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 45866909 - 45867124
Alignment:
Q  19 atcaaactctttattgtaggtcctttgcctggcattgaacatcctattggaatttgtaagaagggcgatatattcttcagaaaaaaggataatgagttag 118  Q
    |||||||| |||||||| ||| ||||| || |  | || ||||||||| ||||| |||||| ||| ||||||||||| |||||| | ||| ||||  |||    
T  45866909 atcaaactttttattgtgggttctttgtcttgtgtcgaccatcctattagaattggtaagacgggtgatatattctttagaaaagaagatgatgaactag 45867008  T
Q  119 tttggtttgatttaagcacccagagaatcgaagagcttggtgttaaaggtgactcatgttgccggataatgatttataaggaaagccttctaccgcttga 218  Q
    |||  ||| |||||||||| |||| ||| ||||||||||||||||||||| | |||  ||||| ||||||  ||||||||||||||||||||||| |||     
T  45867009 tttcatttaatttaagcacacagaaaattgaagagcttggtgttaaaggttattcactttgccagataatagtttataaggaaagccttctaccgattgc 45867108  T
Q  219 aagaaaaaacaattag 234  Q
     ||||  |||||||||    
T  45867109 cagaatcaacaattag 45867124  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 167
Target Start/End: Original strand, 16921102 - 16921183
Alignment:
Q  86 atatattcttcagaaaaaaggataatgagttagtttggtttgatttaagcacccagagaatcgaagagcttggtgttaaagg 167  Q
    ||||||||||||||||| | ||||||||  |||| ||||||||||| |  ||||| |  || ||||||||||||||||||||    
T  16921102 atatattcttcagaaaagatgataatgaaatagtctggtttgatttgaatacccaaatgattgaagagcttggtgttaaagg 16921183  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 53691512 - 53691573
Alignment:
Q  234 gttttattttactttctgctttgtgagcatcataatgttatggcaatacaccattactgatattg 298  Q
    ||||||||||| ||||| ||||||||||||   | || ||| |||||||||||||||||||||||    
T  53691512 gttttattttagtttctactttgtgagcat---attggtattgcaatacaccattactgatattg 53691573  T

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