View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_107 (Length: 301)
Name: NF18404_low_107
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_107 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 39982590 - 39982318
Alignment:
| Q |
18 |
aatttaagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982590 |
aatttaagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaata |
39982491 |
T |
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| Q |
118 |
ggcctaacatgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatt |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982490 |
ggcctaacatgacaccaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatt |
39982391 |
T |
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| Q |
218 |
tccctcaaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctccccttgtagtctct |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39982390 |
tccctcaaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctccccttgtagtctct |
39982318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 44885346 - 44885223
Alignment:
| Q |
18 |
aatttaagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaata |
117 |
Q |
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||||| ||||| ||||| || ||||| |||||||| ||||| || |||||||| | ||| |||| | |||| | ||| ||||||||||| ||||||||| |
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| T |
44885346 |
aatttgagtgtctcagctgcacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaata |
44885247 |
T |
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| Q |
118 |
ggcctaacatgacacaaatccaca |
141 |
Q |
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| T |
44885246 |
gacctaacataactccaatccaca |
44885223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 44914588 - 44914329
Alignment:
| Q |
18 |
aatttaagtgtttcagcagccccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaata |
117 |
Q |
| |
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||||| ||||| ||||| || ||||| |||||||||||||| || ||||| |||| ||| ||| | |||| || || |||| ||||| ||||||||| |
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| T |
44914588 |
aatttgagtgtctcagctgcacctttagccatgcacacacaatgacccattacttcataagcatcttttcttctgtactgcatgaatttgtaggcaaata |
44914489 |
T |
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| Q |
118 |
ggcctaacatgacacaaatccacagagcaaatacccaggatcttcgccagttatcctggaagaagtacttggtatctctataccacctcttaataggatt |
217 |
Q |
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| || |||| |||| |||||| || | |||| ||| | |||| |||| || ||||| | ||||| ||| ||||||||||| | || || |||||| |
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| T |
44914488 |
gaccacacataacaccaatccatagtaccaatatccaagttctttgccaattgtcctgcagaaagtaaatggcatctctatacctcttccgaacaggatt |
44914389 |
T |
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| Q |
218 |
tccctcaaatgtaggcctaagcttttggcttagcatttggctcaggtacttactttctcc |
277 |
Q |
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||| ||||| | |||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
44914388 |
gtattcatatgtacccttaagctttatgcttagcatttggctcaggtacttactatctcc |
44914329 |
T |
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