View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_109 (Length: 298)

Name: NF18404_low_109
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_109
NF18404_low_109
[»] chr6 (1 HSPs)
chr6 (1-290)||(10305825-10306117)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 10306117 - 10305825
Alignment:
Q  1 ttttcattttcaacattaacatcaatattaacattggtgtcatatttttcagg--tgatattg----cattgcatggtgcagtgaccctatttttgatat 94  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||   ||    | ||||||    ||||    |||||| | ||||||||||||||||    
T  10306117 ttttcattttcaacattaacatcaatattaacattggtgtcattttcagcaacattaatattggtgtcattttcaggtgcaataaccctatttttgatat 10306018  T
Q  95 gaagaaaatttgagggtttggttgtgagagtagtagtagtgttgtgagtgatgaattttttggtttgaaaatggannnnnnnatggactaggatgtttgg 194  Q
    |||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  10306017 gaagaaaatttgagggtttggttgtgagagtagtagt---gttgtgagtgatgaattttttggtttgaaaatggatttttttatggactaggatgtttgg 10305921  T
Q  195 ttttggatatgtgaggtttttgtggagatgatgaagatgttgttgttgcatgttggtggaaatttttgtgtgaataggaacaagtgaatgatgatg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10305920 ttttggatatgtgaggtttttgtggagatgatgaagatgttgttgttgcatgttggtggaaatttttgtgtgaataggaacaagtgaatgatgatg 10305825  T

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