View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_113 (Length: 296)
Name: NF18404_low_113
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_113 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 3346936 - 3346671
Alignment:
| Q |
15 |
aataataaccttagttgcttgttcnnnnnnnntaatatccttactttgtttttatttagagaaaatactagaccatttacgatcatttggt-gcatnnnn |
113 |
Q |
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| T |
3346936 |
aataataaccttagttgcttgttcaaaaaaaataatatccttactttgtttttatttagagaaaatacttgaccatttacaatcatttggtcgcataaaa |
3346837 |
T |
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| Q |
114 |
nnnnnnnnntgtttatatgtcaaaattttaagataaaactagcttaaaaaatgaaactactattcaaaattttgcaagaaactttttataatgttatata |
213 |
Q |
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| T |
3346836 |
aaaaaa---tgtttatatgttaaaattttaagataaaactagcttaaaaaatgaaactactattcaaaattttgcaagaaactttttataatgttatata |
3346740 |
T |
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| Q |
214 |
cttgcnnnnnnntcactcataagtagatgttaaccgaatatcagagactattactacgtgcagaataat |
282 |
Q |
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| T |
3346739 |
cttgcaaaaaaatcactcataagtagatgttaaccgaatatcagagactattactacttgcagaataat |
3346671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 123 - 279
Target Start/End: Complemental strand, 3331640 - 3331474
Alignment:
| Q |
123 |
tgtttatatgtcaaaattttaagataaaactagcttaaaaaatgaaactactattcaaaattttg------------caagaaactttttataatgttat |
210 |
Q |
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| T |
3331640 |
tgtttctatatcaaaattttaagataaaactagctttaaaaatgaaactactattcaaaattttgagctttattttgcaagaaactttttataatgttat |
3331541 |
T |
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| Q |
211 |
atacttgcnnnnnnntcactcataagtagatgttaaccgaatatcagagactattactacgtgcagaat |
279 |
Q |
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| T |
3331540 |
a--cttgcaaaaaaatcactcataagtagatgttaaccgaatatcagagactattactacgtgcagaat |
3331474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 3331709 - 3331656
Alignment:
| Q |
49 |
atatccttactttgtttttatttagagaaaatactagaccatttacgatcatttgg |
104 |
Q |
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| T |
3331709 |
atatccttactttgttt--atttagagaaaatacttgaccgtttacaatcatttgg |
3331656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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