View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_115 (Length: 289)
Name: NF18404_low_115
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_115 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 150 - 279
Target Start/End: Complemental strand, 1281932 - 1281803
Alignment:
| Q |
150 |
gctatttccaatgctcactaaatgaatatcactttcaaactaagcaacaaaccaaatacaattccacttccaagaatgtaagtttcaaaccatatttaca |
249 |
Q |
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| T |
1281932 |
gctatttccaatgctcactaaatgaatatcactttcaaactaagcaacaaaccaaatacaattccacttccaagaatgtaagtttcaaaccatatttaca |
1281833 |
T |
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| Q |
250 |
ttttacatatttcaaggttccctttgcttc |
279 |
Q |
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| T |
1281832 |
ttttacatatttcaaggttccctttgcttc |
1281803 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 1282068 - 1281977
Alignment:
| Q |
1 |
cacacacacaaagcgtaaatcaaactatgtatatctgcttccattaacaaattgctatatatgatccaacaatatatacaacctttacatagctaatcta |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1282068 |
cacacacacaaagcataaatcaaactatgtatatctgcttccattaacaaat------------tccaacaatatatacaacctttacatagctaatcta |
1281981 |
T |
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