View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_12 (Length: 667)

Name: NF18404_low_12
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_12
NF18404_low_12
[»] chr3 (15 HSPs)
chr3 (1-648)||(42770024-42770662)
chr3 (50-177)||(42772327-42772453)
chr3 (50-136)||(42772772-42772857)
chr3 (33-213)||(42772794-42772971)
chr3 (1-131)||(42772963-42773092)
chr3 (146-260)||(42772323-42772437)
chr3 (469-522)||(42770383-42770436)
chr3 (28-76)||(42771992-42772040)
chr3 (369-418)||(42770487-42770536)
chr3 (87-196)||(42770703-42770811)
chr3 (88-144)||(42772452-42772508)
chr3 (135-213)||(42772980-42773058)
chr3 (363-434)||(42772667-42772735)
chr3 (4-72)||(42770814-42770882)
chr3 (135-179)||(42771999-42772043)
[»] chr1 (1 HSPs)
chr1 (2-72)||(19195893-19195963)


Alignment Details
Target: chr3 (Bit Score: 557; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 648
Target Start/End: Original strand, 42770024 - 42770662
Alignment:
Q  1 gagaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggtttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42770024 gagaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaaacttttaaaaacgttcaagaaggtttt 42770123  T
Q  101 gtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770124 gtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcg 42770223  T
Q  201 tggttgaaggtgagacctctgatacagtttgagaaggttctgcggttgaaggcgagaaagcagnnnnnnnnttctaagaacattcaagaaggttctgcga 300  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||        | |||||||||||||||||||||||||||    
T  42770224 tggttgaaggtgagacctctaatacagtttgagaaggttctgcggttgaaggtgagaaagcagaaaaaaact-ctaagaacattcaagaaggttctgcga 42770322  T
Q  301 ctgaaggtgaaac-tctgaggttctaggaggttctgctgaatacaacgagaatgaggagaatgatgctctttgtgtcgatgttattataaagataacgga 399  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  42770323 ctgaaggtgaaacctctgaggttccaggaggttctgctgaatacaacgaga---------atgatgctctttgtgtcgatgttattataaagataacgga 42770413  T
Q  400 agatgaaaggattaaagaaaaaacttattccatttcttcgtttcaattagttgtttttaatggaatctatttcttctttaatcctttgatcttctgttat 499  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770414 agatgaaaggattaaagaagaaacttattccatttcttcgtttcaattagttgtttttaatggaatctatttcttctttaatcctttgatcttctgttat 42770513  T
Q  500 ctttatcataacatcgacacaaatatcatcgtcttccttatccgtctcgttgtattcagctgtaccttctcctcctagatttcaccttcagccatgtgac 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770514 ctttatcataacatcgacacaaatatcatcgtcttccttatccgtctcgttgtattcagctgtaccttctcctcctagatttcaccttcagccatgtgac 42770613  T
Q  600 cttgaatgttcttaaaaattttcttctgctttctcatcttcagccgcag 648  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42770614 cttgaatgttcttaaaaattttcttctgctttctcatcttcagccgcag 42770662  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 42772327 - 42772453
Alignment:
Q  50 aaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttg 149  Q
    |||||| |||||||||||||||||||| |||| |||||| |||||||||  ||||||||||||||||||| | ||| ||||||| |||||| |||||  |    
T  42772327 aaggtgggaaagcggaagaagaaaact-ctaagaacgttaaagaaggttccgtggctgaaggtgaaatctttgagacggttccagaaggttttgcggccg 42772425  T
Q  150 aaggtgagaaagaggaagaagaaaactc 177  Q
    ||||||||||||||||||||||||||||    
T  42772426 aaggtgagaaagaggaagaagaaaactc 42772453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 42772857 - 42772772
Alignment:
Q  50 aaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaa 136  Q
    |||| ||||||| |||||||||||||| |||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||    
T  42772857 aaggcgagaaaggggaagaagaaaact-ctaagaacgttgatgaaggttttgtggctaaaggtgaaatctctaagaaggttccaaaa 42772772  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 42772971 - 42772794
Alignment:
Q  33 agaaggttctgcagctaaaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttcc 132  Q
    |||||||||||  | | ||||||| ||||||| |||||||||||   || |||| |||| ||| ||||||||||||| || |||||| | ||| ||||||    
T  42772971 agaaggttctgttgttgaaggtgacaaagcgggagaagaaaact---aagaacgatcaaaaagattttgtggctgaaagtcaaatctatgagatggttcc 42772875  T
Q  133 aaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtga 213  Q
    | |||||| |  ||  ||||| ||||||| ||||||||||||||||| ||||||| | |||||||| |||| | |||||||    
T  42772874 ataaggttttttggccgaaggcgagaaaggggaagaagaaaactctaagaacgttgatgaaggttttgtggctaaaggtga 42772794  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 42773092 - 42772963
Alignment:
Q  1 gagaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaaacttctaaaaacgttcaagaaggtttt 100  Q
    |||| ||||||||| |||||||| ||||||  |||||||||||  ||| ||| || |||||  ||||||||||||| |||| ||| ||||||||| ||||    
T  42773092 gagagaaaagctgacgtgaaagggaaaggtggagaaggttctgttgctgaagctgggaaagtagaagaagaaaact-ctaagaacattcaagaagctttt 42772994  T
Q  101 gtggctgaaggtgaaatctctaagaaggttc 131  Q
    ||||||||||||||||| ||  |||||||||    
T  42772993 gtggctgaaggtgaaatatccgagaaggttc 42772963  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 146 - 260
Target Start/End: Original strand, 42772323 - 42772437
Alignment:
Q  146 gttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtgagacctctgatacagtttgagaaggttctgcgg 245  Q
    |||||||||| ||||| ||||||||||||||||| ||||||| ||||||||| ||||| ||||||||| | || ||| || |||  |||||||| |||||    
T  42772323 gttgaaggtgggaaagcggaagaagaaaactctaagaacgttaaagaaggttccgtggctgaaggtgaaatctttgagacggttccagaaggttttgcgg 42772422  T
Q  246 ttgaaggcgagaaag 260  Q
      ||||| |||||||    
T  42772423 ccgaaggtgagaaag 42772437  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 469 - 522
Target Start/End: Complemental strand, 42770436 - 42770383
Alignment:
Q  469 tttcttctttaatcctttgatcttctgttatctttatcataacatcgacacaaa 522  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||    
T  42770436 tttcttctttaatcctttcatcttccgttatctttataataacatcgacacaaa 42770383  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 42771992 - 42772040
Alignment:
Q  28 ggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaaaact 76  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  42771992 ggtaaagaaggttctgcagctgaaggtgagaaagcggaagcagaaaact 42772040  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 42770536 - 42770487
Alignment:
Q  369 tttgtgtcgatgttattataaagataacggaagatgaaaggattaaagaa 418  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  42770536 tttgtgtcgatgttatgataaagataacagaagatcaaaggattaaagaa 42770487  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 42770811 - 42770703
Alignment:
Q  87 ttcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgt 186  Q
    ||||||||  || |||||||||||||||||||||| |||| ||| || ||| || || ||||||||||||||||| || |||||||| ||||| ||| ||    
T  42770811 ttcaagaaacttatgtggctgaaggtgaaatctcttagaatgtttcacaagattttgtggttgaaggtgagaaagcgg-agaagaaagctctaagaatgt 42770713  T
Q  187 tcaagaaggt 196  Q
    | || |||||    
T  42770712 taaataaggt 42770703  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 42772452 - 42772508
Alignment:
Q  88 tcaagaaggttttgtggctgaaggtgaaatctctaagaaggttccaaaaggttctgc 144  Q
    ||||||||||| ||||||||||||||||| || | ||||||||| | ||||||||||    
T  42772452 tcaagaaggttctgtggctgaaggtgaaacctttgagaaggttctagaaggttctgc 42772508  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 42773058 - 42772980
Alignment:
Q  135 aaggttctgcggttgaaggtgagaaagaggaagaagaaaactctaggaacgttcaagaaggtttcgtggttgaaggtga 213  Q
    |||||||||  | ||||| || |||||  |||||||||||||||| |||| ||||||||| ||| |||| |||||||||    
T  42773058 aaggttctgttgctgaagctgggaaagtagaagaagaaaactctaagaacattcaagaagcttttgtggctgaaggtga 42772980  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 434
Target Start/End: Complemental strand, 42772735 - 42772667
Alignment:
Q  363 atgctctttgtgtcgatgttattataaagataacggaagatgaaaggattaaagaaaaaacttattccattt 434  Q
    ||||||||||||| |||| |||  ||||||||   ||||||||||||||||| ||| ||||| |||||||||    
T  42772735 atgctctttgtgtagatgctatattaaagata---gaagatgaaaggattaaggaagaaactaattccattt 42772667  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 42770882 - 42770814
Alignment:
Q  4 aaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaa 72  Q
    ||||||| ||||||||| || ||| ||||| |||||| | ||||| ||||||||||||  |||||||||    
T  42770882 aaaaaagttgaagtgaaggggaaaagtaaaaaaggttatacagctgaaggtgagaaagtcgaagaagaa 42770814  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 42771999 - 42772043
Alignment:
Q  135 aaggttctgcggttgaaggtgagaaagaggaagaagaaaactcta 179  Q
    |||||||||| | |||||||||||||| ||||| |||||||||||    
T  42771999 aaggttctgcagctgaaggtgagaaagcggaagcagaaaactcta 42772043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 19195963 - 19195893
Alignment:
Q  2 agaaaaaagctgaagtgaaaggtaaaggtaaagaaggttctgcagctaaaggtgagaaagcggaagaagaa 72  Q
    |||| ||||||||||||||||| |||||||||||||||||||| ||  |||| ||||||||||||||||||    
T  19195963 agaagaaagctgaagtgaaagggaaaggtaaagaaggttctgcggcggaaggagagaaagcggaagaagaa 19195893  T

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