View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_122 (Length: 274)
Name: NF18404_low_122
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_122 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 91 - 258
Target Start/End: Complemental strand, 55243070 - 55242903
Alignment:
| Q |
91 |
aaactcgttgtgatggatatatgtagaggtaatggcatgagagagggttttgttgtccgattcaaaccatatgtcgtggaattcatatgagatcgtcaag |
190 |
Q |
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| T |
55243070 |
aaactcgttgtgatggatatatgtagaggtaatggcatgagagagggttttgttgtccgattcaaaccatatgtcgtggaattcatatgagatcgccaag |
55242971 |
T |
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| Q |
191 |
ttgatcgcatcaacattacactttaacactcctacctgaggtttgaccccatagataagatgaaaata |
258 |
Q |
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| T |
55242970 |
ttgatcgcatcaacattacactttaacacacctacctgaggtttgaccccatagataagatgaaaata |
55242903 |
T |
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