View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_125 (Length: 272)
Name: NF18404_low_125
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_125 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 9172443 - 9172564
Alignment:
| Q |
135 |
gacagtgataaagttcgagaatcttgttcctggtaaatggaaagaagttcaagcagggataaacataacgaagaaagaacagcctaagatagctcaagag |
234 |
Q |
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| T |
9172443 |
gacagtgataaagtccgagaatcttgttcctggtaaatggaaagaagttcaagcagggataaacataacgaagaaagaacagcctaagatagctcaagag |
9172542 |
T |
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| Q |
235 |
attgagtttaatagtaaagaag |
256 |
Q |
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| T |
9172543 |
attgagtttaatagtaaagaag |
9172564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 8653680 - 8653562
Alignment:
| Q |
135 |
gacagtgataaagttcgagaatcttgttcctggtaaatggaaagaagttcaagcagggataaacataacgaagaaagaacagcctaagatagctcaagag |
234 |
Q |
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| T |
8653680 |
gacagtgataaagtccgagaatcttgttcctgataaatggaaagaagttcaagcagagataaacataacgaagaaagaacggcgtaagatagcacaagag |
8653581 |
T |
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| Q |
235 |
attgagtttaatagtaaag |
253 |
Q |
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| T |
8653580 |
attgagtttaatagtaaag |
8653562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 9172323 - 9172378
Alignment:
| Q |
15 |
catcatcggagatcgtctggttttcgaagaaggcattttcgaagaccccattttcc |
70 |
Q |
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| T |
9172323 |
catcatcggagattgtctggttttcgaagaaggcattttcgaagaccccattttcc |
9172378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 256
Target Start/End: Original strand, 9172562 - 9172609
Alignment:
| Q |
209 |
aagaacagcctaagatagctcaagagattgagtttaatagtaaagaag |
256 |
Q |
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| T |
9172562 |
aagaacggcgtaagatagctcaagagtttgagtttaatagtaaagaag |
9172609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 8653800 - 8653747
Alignment:
| Q |
15 |
catcatcggagatcgtctggttttcgaagaaggcattttcgaagaccccatttt |
68 |
Q |
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| T |
8653800 |
catcatcggagactgtcttgtcttcgaggaaggcattttcgaagaccccatttt |
8653747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 9172607 - 9172649
Alignment:
| Q |
209 |
aagaacagcctaagatagctcaagagattgagtttaatagtaa |
251 |
Q |
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| T |
9172607 |
aagaacggcgtaagatagctcaagagtttgagtttaatagtaa |
9172649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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