View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18404_low_13 (Length: 661)

Name: NF18404_low_13
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18404_low_13
NF18404_low_13
[»] chr4 (1 HSPs)
chr4 (164-507)||(44523853-44524199)
[»] chr2 (4 HSPs)
chr2 (323-507)||(41318931-41319115)
chr2 (167-326)||(41322105-41322264)
chr2 (165-255)||(37726150-37726240)
chr2 (440-507)||(6128526-6128593)
[»] chr7 (6 HSPs)
chr7 (17-162)||(3800200-3800345)
chr7 (510-646)||(3800062-3800198)
chr7 (22-146)||(3789764-3789888)
chr7 (439-508)||(11831185-11831254)
chr7 (445-509)||(37130520-37130584)
chr7 (458-508)||(11831132-11831182)
[»] chr5 (1 HSPs)
chr5 (166-507)||(12503202-12503537)
[»] chr8 (1 HSPs)
chr8 (422-508)||(7495621-7495707)


Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 164 - 507
Target Start/End: Original strand, 44523853 - 44524199
Alignment:
Q  164 ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttac 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||    
T  44523853 ctctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactgatgtctctaaagtacatgttac 44523952  T
Q  264 acttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaac 363  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44523953 acttacatatatatgtcgaataaccaacggtaataaacatgatataaagagatatacattaagtgtcttcatggctattatttgcttttgataagccaac 44524052  T
Q  364 ggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcattgcattcacacatattcctttccaatggtttgtttgatttct 463  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  44524053 agtaataaacatcatataaggaaatatacttatggtttgactccatgtattaaggcattacattcacacatattcctttccaatggtttgtttgatttct 44524152  T
Q  464 cttgatttgat---tcattaagagaggaatcttcattattctttaca 507  Q
    |||||||||||   |||||||||||||||||||||||||||||||||    
T  44524153 cttgatttgattcatcattaagagaggaatcttcattattctttaca 44524199  T

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Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 323 - 507
Target Start/End: Complemental strand, 41319115 - 41318931
Alignment:
Q  323 taagtgtcttcatagctattatttgcttttgataagccaacggtaataaacatcatataaggaaatatacttatggtttgactccatgtattaatgcatt 422  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  41319115 taagtgtcttcatggctattatttgcttttgataagtcaacggtaataaacatcatataagtaaatatacttatggtttgactccatgtattaaggcatt 41319016  T
Q  423 gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41319015 gcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 41318931  T

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Target: chr2; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 167 - 326
Target Start/End: Complemental strand, 41322264 - 41322105
Alignment:
Q  167 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacact 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||    
T  41322264 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgttcactgatatctctaaagtacatgttacact 41322165  T
Q  267 tacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaag 326  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41322164 tacatatatatgttgaataaccaacggtaataaacatgatataaagagatatacattaag 41322105  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 37726240 - 37726150
Alignment:
Q  165 tctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagta 255  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| || || ||||||||    
T  37726240 tctaatgaaaataaaaatatgatatgaacaatggacagtggctagaatgtaatctggtttgtatattatgtccactgatatctctaaagta 37726150  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 6128526 - 6128593
Alignment:
Q  440 tttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 507  Q
    ||||||||||||||||||| || |||||||||||| |||||   || |||||||| | ||||||||||    
T  6128526 tttccaatggtttgtttgacttgtcttgatttgatccattacttgatgaatcttcttgattctttaca 6128593  T

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Target: chr7 (Bit Score: 138; Significance: 8e-72; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 3800345 - 3800200
Alignment:
Q  17 atattatcaaataagatcttatctacaccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttg 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800345 atattatcaaataagatcttatctacgccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttg 3800246  T
Q  117 gatttcctgcaatgccaaaacgagatcatggaatatttgatgttga 162  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  3800245 gatttcctgcaatgccaaaacgagatcatgaaatatttgatgttga 3800200  T

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Target: chr7; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 510 - 646
Target Start/End: Complemental strand, 3800198 - 3800062
Alignment:
Q  510 ctcaaccagagctcgaaattatgttacctcaacaactattaacaaaagattaaacacacataaatcataaacaatgaaacaagaccgtttgtttaaatag 609  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||    
T  3800198 ctcaaccaaagctcgaaattatgttacctcaacaactagtaacaaaagattaaagagacagaaatcataaacaatgaaacaagaccgtttgtttaaatag 3800099  T
Q  610 ttcgactaagtgtgtccattaaatagtagttgtagtt 646  Q
    |||||| ||||||||||||||||||||||||||||||    
T  3800098 ttcgaccaagtgtgtccattaaatagtagttgtagtt 3800062  T

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Target: chr7; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 22 - 146
Target Start/End: Original strand, 3789764 - 3789888
Alignment:
Q  22 atcaaataagatcttatctacaccacgccatgggatgtttgttgtgtccatcataggtatatccggggagatttgaatttcttgttttttggttggattt 121  Q
    |||||| |||||||||||||| || |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  3789764 atcaaagaagatcttatctacgccgcgccatgggaagtttgttgtgttcatcataggtatatcaggggagatttgaatttcttgttttttggtgggattt 3789863  T
Q  122 cctgcaatgccaaaacgagatcatg 146  Q
    ||| |||||| |||| |||||||||    
T  3789864 cctacaatgcgaaaaggagatcatg 3789888  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 439 - 508
Target Start/End: Original strand, 11831185 - 11831254
Alignment:
Q  439 ctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaa 508  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| ||  || |||||||||||||||||||    
T  11831185 ctttccaatagtttgtttgatttgtcttgatttgattcattaatagttgagtcttcattattctttacaa 11831254  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 445 - 509
Target Start/End: Complemental strand, 37130584 - 37130520
Alignment:
Q  445 aatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaat 509  Q
    |||||||| |||||||| ||||||||||||||||||| ||  || | ||||||||||||||||||    
T  37130584 aatggtttttttgatttgtcttgatttgattcattaatagttgagttttcattattctttacaat 37130520  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 458 - 508
Target Start/End: Complemental strand, 11831182 - 11831132
Alignment:
Q  458 atttctcttgatttgattcattaagagaggaatcttcattattctttacaa 508  Q
    |||| ||||||||||||||||||| ||  || |||||||||||||||||||    
T  11831182 atttgtcttgatttgattcattaatagttgagtcttcattattctttacaa 11831132  T

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Target: chr5 (Bit Score: 111; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 166 - 507
Target Start/End: Original strand, 12503202 - 12503537
Alignment:
Q  166 ctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgtaatcaggtttgtatattatgtccactaatttcactaaagtacatgttacac 265  Q
    ||||||||| |||||||| |||||| ||||||||| || ||| |||||||||| |||||||||||||||||||||||| || ||| ||||||||||||      
T  12503202 ctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgtaatctggtttgtatattatgtccactaatctctctacagtacatgttac-- 12503299  T
Q  266 ttacatatatatgttgaataaccaacggtaataaacatggtataaagagatatacattaagtgtcttcatagctattatttgcttttgataagccaacgg 365  Q
        |||||||||   |||| |||||||||||  ||||| ||||| || |||||||||||||| ||| || |||||||||| ||||||||||||||||||    
T  12503300 ----atatatatgactaatagccaacggtaatgcacatgatataaggaaatatacattaagtggctttatggctattatttccttttgataagccaacgg 12503395  T
Q  366 taataaacatcatataaggaaatatactta------------tggtttgactccatgtattaatgcattgcattcacacatattcctttccaatggtttg 453  Q
    ||||||||   |||||||||||||||||||            |||||||||||||||||| || |||||||||||||||  |||  ||||||||||        
T  12503396 taataaaccatatataaggaaatatacttaagtgcctctatttggtttgactccatgtatcaaggcattgcattcacac--attgatttccaatgg---- 12503489  T
Q  454 tttgatttctcttgatttgattcattaagagaggaatcttcattattctttaca 507  Q
         ||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  12503490 -----tttatcttgatttgattcattaa-agaggaatcttcgttattctttaca 12503537  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 422 - 508
Target Start/End: Original strand, 7495621 - 7495707
Alignment:
Q  422 tgcattcacacatattcctttccaatggtttgtttgatttctcttgatttgattcattaagagaggaatcttcattattctttacaa 508  Q
    |||||||| ||| |||  |||| ||||||||||||||||| | || |||||||  ||| |  ||||||||||||| |||||||||||    
T  7495621 tgcattcagacaaattattttctaatggtttgtttgatttgttttcatttgatctattgattgaggaatcttcatgattctttacaa 7495707  T

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