View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_131 (Length: 265)
Name: NF18404_low_131
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_131 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 18642253 - 18642003
Alignment:
| Q |
1 |
ccgactgtctaatatgtgtttatcctaagttttatttcaggtgctgctaaaccttttgaagctatatttgtctcatccaaaaccaagaacaaggatgcat |
100 |
Q |
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| T |
18642253 |
ccgactgtctaatatgtgtttatcctaagttttatttcaggtgctgctaaaccttttgaagctatatttgtctcatccaaaaccaagaacaaggatgtat |
18642154 |
T |
|
| Q |
101 |
ttgatccattaattgtgatccttcatggagggccacaagacgtctcttcgtcacacttctcaaattcttgggcgtttctatcttcagttggatacagttt |
200 |
Q |
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| T |
18642153 |
ttgatccattaattgtgatccttcatggagggccacaagacgtctcttcgtcacacttctcaaattcttgggcgtttctatcttcagttggatacagttt |
18642054 |
T |
|
| Q |
201 |
gctaattgtaaattacaggtaatacttgttcctgaaatgcagttagagatt |
251 |
Q |
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| T |
18642053 |
gctaattgtaaattacaggtaatacttgttcctgaaatgcagttagagatt |
18642003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 18632191 - 18632088
Alignment:
| Q |
34 |
atttcaggtgctgctaaaccttttgaagctatatttgtctcatccaaaaccaagaacaaggatgcatttgatccattaattgtgatccttcatggagggc |
133 |
Q |
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| T |
18632191 |
atttcaggttcttgtaaaccttatgaatctatatttgtgtcatcaaaaaccaagaaaagtgacgcatgtgatccactaattgtggtccttcatgggggac |
18632092 |
T |
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| Q |
134 |
caca |
137 |
Q |
| |
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|||| |
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| T |
18632091 |
caca |
18632088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 15091716 - 15091819
Alignment:
| Q |
34 |
atttcaggtgctgctaaaccttttgaagctatatttgtctcatccaaaaccaagaacaaggatgcatttgatccattaattgtgatccttcatggagggc |
133 |
Q |
| |
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||||||||| || ||||||||||||| |||||||||| ||||| ||||||||||| | || |||| ||||||| |||||||| |||||||||| || | |
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| T |
15091716 |
atttcaggttcttgtaaaccttttgaatctatatttgtgtcatcaaaaaccaagaaaagcgacgcatgtgatccactaattgtggtccttcatgggggac |
15091815 |
T |
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| Q |
134 |
caca |
137 |
Q |
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|||| |
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| T |
15091816 |
caca |
15091819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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