View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18404_low_135 (Length: 262)
Name: NF18404_low_135
Description: NF18404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18404_low_135 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 40577740 - 40577992
Alignment:
| Q |
1 |
attttacaatcaaagtgactcaaaagtacatgacttcaatccatgtggttattcttttttggttgaaaatggaaactacagcttgagacgatcagacctc |
100 |
Q |
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| T |
40577740 |
attttacaatcaaagtgactcaaaagtacatgacttcaatccatgtggttattcttttttggttgcaaatggaaactacagcttgacacgatcagacctc |
40577839 |
T |
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| Q |
101 |
atgttgatgaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaagg |
200 |
Q |
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| T |
40577840 |
atgttgatgaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaagg |
40577939 |
T |
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| Q |
201 |
ccattaaaagtacatgttacgaaacaggaaccaacaaatctggttacctttgc |
253 |
Q |
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| T |
40577940 |
ccattaaaagtacatgttacgaaacaggaaccaacaaatctggttacctttgc |
40577992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 40571314 - 40571569
Alignment:
| Q |
1 |
attttacaatcaaagtgactcaaaagtacatgacttcaatccatgtggttattcttttttggttgaaaatggaaactacagcttgagacgatcagacctc |
100 |
Q |
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| T |
40571314 |
attttacaatcaaagtcactcaaaagtacatgacttcaatccatgtggctatgcttttttgattgaaaatggatcctacagcttaacacgatcagacctc |
40571413 |
T |
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| Q |
101 |
at---gttgatgaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgta |
197 |
Q |
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| T |
40571414 |
ctcaagttgaagaataaggagtttcctgtgttgttgaactggacagtaggaaaccaaacatgcctgcaagctcagaagaatcttttcaattatgcatgta |
40571513 |
T |
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| Q |
198 |
aggccattaaaagtacatgttacgaaacaggaaccaacaaatctggttacctttgc |
253 |
Q |
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| T |
40571514 |
aggccgagaaaagtacatgttacgatccaggaaccaacaaatctggttacctttgc |
40571569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 40566643 - 40566840
Alignment:
| Q |
26 |
gtacatgacttcaatccatgtggttattcttttttggttgaaaatggaaactacagctt-gagacgatcagacctcat---gttgatgaagaaggagttt |
121 |
Q |
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| T |
40566643 |
gtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatcca-cagacctccttgagttaaagaagaaggagttt |
40566741 |
T |
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| Q |
122 |
cctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttac |
220 |
Q |
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| T |
40566742 |
cctgtgttgttcgactgggcagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttac |
40566840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 40600663 - 40600887
Alignment:
| Q |
28 |
acatgacttcaatccatgtggttattcttttttggttgaaaatggaaactacagcttgagacgatcagacctcatgttgatgaagaaggagtttcctgtg |
127 |
Q |
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| T |
40600663 |
acatgacttccgttcatgtggttatgcttttgtggttgaatatggagcctacagcttcaattccacagacctcaagttgaataacaaggagtttcctgtg |
40600762 |
T |
|
| Q |
128 |
ttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttacgaaacag |
227 |
Q |
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| T |
40600763 |
ttgttggactgggcagtagggaaccaaacttgtcatcaagctcagaaggatctttccacttatgcgtgtaaggccgacaaaagtacatgttacgatgcaa |
40600862 |
T |
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| Q |
228 |
gaaccaacaaatctggttacctttg |
252 |
Q |
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| T |
40600863 |
caactgacagatctggttacctttg |
40600887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 109 - 253
Target Start/End: Original strand, 40589702 - 40589849
Alignment:
| Q |
109 |
gaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattc---caattatgcttgtaaggccatt |
205 |
Q |
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| T |
40589702 |
gaagaagaactttcctgtgttgttggactgggcagtaggaaaccaaacctgtcagcaagctcagaaggatctttcaagtaagtatgcttgtaaggcagac |
40589801 |
T |
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| Q |
206 |
aaaagtacatgttacgaaacaggaaccaacaaatctggttacctttgc |
253 |
Q |
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| T |
40589802 |
agaagtatatgttacgatgcagaaaccatcaaatctggttacctttgc |
40589849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 40596122 - 40596204
Alignment:
| Q |
119 |
tttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggc |
201 |
Q |
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||||||||||||||||||||| |||||| || ||||| |||| |||||||| |||| ||| ||||| |||||| |||||||| |
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| T |
40596122 |
tttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcggaaggatctttccacttatgcatgtaaggc |
40596204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 2017032 - 2016834
Alignment:
| Q |
25 |
agtacatgacttcaatccatgtggttattcttttttggttgaaaatggaaactacagctt-gagacgatcagacctcat---gttgatgaagaaggagtt |
120 |
Q |
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|||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||| || || | | | |||||| | |||| ||||||||| || |
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| T |
2017032 |
agtacatgacttcaatccttgtggttatgctttttttgttgaaaatggagcctacactttcgaatcca-cggacctcctcaagttggagaagaaggaatt |
2016934 |
T |
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| Q |
121 |
tcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttac |
220 |
Q |
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||||||||||||||||||| |||||| || ||||| |||| ||||||||||||| ||| | | |||||||| ||||||| || ||||||||||||||| |
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| T |
2016933 |
tcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttgcaaattatgcctgtaaggacaacaaaagtacatgttac |
2016834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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